RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 OR52P1PQ8NH57 321 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 OR5W2Q8NH69 310 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 OR10A6Q8NH74 314 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 BBS10Q8TAM1 723 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 GPR119Q8TDV5 335 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 WDR60Q8WVS4 1066 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 ARSGQ96EG1 525 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 EFCAB1Q9HAE3 211 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 MYO7BQ6PIF6 2116 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 USP9XQ93008 2570 aaPredicted RBP14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 OR2M5A3KFT3 312 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 DNAJA2O60884 412 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 NUDT14O95848 222 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 LINGO3P0C6S8 592 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ETS2P15036 469 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 RBBP4Q09028 425 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 PLPPR5Q32ZL2 321 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 FAM91A1Q658Y4 838 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 VRK2Q86Y07 508 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ZZZ3Q8IYH5 903 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 TMCO5AQ8N6Q1 288 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 C11orf65Q8NCR3 313 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 CCDC197Q8NCU1 140 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 OR5M1Q8NGP8 315 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 NPAS1Q99742 590 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 PIGQQ9BRB3 760 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 GPATCH1Q9BRR8 931 aaKnown RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 PRDM14Q9GZV8 571 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 TP63Q9H3D4 680 aaPredicted RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 DIDO1Q9BTC0 2240 aaKnown RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 C7orf72A4D263 438 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 FIGNL2A6NMB9 653 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 SHISA8B8ZZ34 492 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 CCL21O00585 134 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 CYP7B1O75881 506 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 THBS1P07996 1170 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 STARP49675 285 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 CCR4P51679 360 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 CBFBQ13951 182 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 TOMM34Q15785 309 aaPredicted RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 LIN52Q52LA3 116 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 MRPL2Q5T653 305 aaKnown RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ZNF585AQ6P3V2 769 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ENPP6Q6UWR7 440 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 HACD2Q6Y1H2 254 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ZNF836Q6ZNA1 936 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 CALHM3Q86XJ0 350 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 GTPBP8Q8N3Z3 284 aaPredicted RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 FAM26EQ8N5C1 309 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 HIPK4Q8NE63 616 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 CNOT9Q92600 299 aaKnown RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ZBTB8AQ96BR9 441 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ZNF524Q96C55 264 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 WDYHV1Q96HA8 205 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ECSITQ9BQ95 431 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 EXOSC3Q9NQT5 275 aaKnown RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 DNAJB12Q9NXW2 375 aaKnown RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ZNF443Q9Y2A4 671 aaPredicted RBP14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 MEMO1Q9Y316 297 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 ZNF337Q9Y3M9 751 aa14.97□□□□□ -0.01
CCDC28A-202ENST00000611852 CDHR4A6H8M9 788 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 FAM47E-STBD1D6RA91 191 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 E9PLN8 166 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 LINC01387J3KSC0 135 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 EBAG9O00559 213 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 ADAM11O75078 769 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 WDR1O75083 606 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 AGFG2O95081 481 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 PABPC4LP0CB38 370 aaKnown RBP14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 CPN1P15169 458 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 ZNF17P17021 662 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 PSMA4P25789 261 aaKnown RBP14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 ACVR2AP27037 513 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 LHX2P50458 406 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 NUDT2P50583 147 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 EEF1A1P68104 462 aaKnown RBP14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 ART3Q13508 389 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 LARS2Q15031 903 aaKnown RBP14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 RNF220Q5VTB9 566 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 C8orf82Q6P1X6 216 aaPredicted RBP14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 PM20D2Q8IYS1 436 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 FITM2Q8N6M3 262 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 POC1BQ8TC44 478 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 VKORC1Q9BQB6 163 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 SPATA9Q9BWV2 254 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 PIF1Q9H611 641 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 RLIMQ9NVW2 624 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 ALKBH4Q9NXW9 302 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 ZNF232Q9UNY5 417 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 ANGPT4Q9Y264 503 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 IFT52Q9Y366 437 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 CHST2Q9Y4C5 530 aa14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 GPC6Q9Y625 555 aaPredicted RBP14.96□□□□□ -0.02
CCDC28A-202ENST00000611852 GABRA1P14867 456 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 ZNF708P17019 499 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 PRKCAP17252 672 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 AQP1P29972 269 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 CLDN18P56856 261 aa14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 PCBP3P57721 371 aaKnown RBP14.95□□□□□ -0.02
CCDC28A-202ENST00000611852 QPRTQ15274 297 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms