RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 DSPPQ9NZW4 1301 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 OR2M5A3KFT3 312 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 E9PLN8 166 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 DCTN3O75935 186 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 GABRA1P14867 456 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 RPS4Y1P22090 263 aaKnown RBP17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 SLC6A2P23975 617 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 ACVR2AP27037 513 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 B3GALT5-AS1P59052 145 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 CDK6Q00534 326 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 SKP2Q13309 424 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 CBFBQ13951 182 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 SCARB2Q14108 478 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 PLPPR5Q32ZL2 321 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 NANOGP8Q6NSW7 305 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 CMIPQ8IY22 773 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 OR52P1PQ8NH57 321 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 OR5W2Q8NH69 310 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 SSC4DQ8WTU2 575 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 ZBTB8AQ96BR9 441 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 VKORC1Q9BQB6 163 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 TMEM38AQ9H6F2 299 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 NANOGQ9H9S0 305 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 BCL2L10Q9HD36 194 aa17.8■□□□□ 0.44
SHKBP1-214ENST00000597396 CLDN24A6NM45 220 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 SHISA8B8ZZ34 492 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 LINC01387J3KSC0 135 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 FXYD1O00168 92 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 AIM2O14862 343 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 SHOX2O60902 331 aaPredicted RBP17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 PGM3O95394 542 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 FAM107AO95990 144 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 PEPDP12955 493 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 NID1P14543 1247 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 POU3F2P20265 443 aaPredicted RBP17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 PGM1P36871 562 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 STARP49675 285 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 SRYQ05066 204 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 LARS2Q15031 903 aaKnown RBP17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 LIN52Q52LA3 116 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 C1orf185Q5T7R7 199 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 GKAP1Q5VSY0 366 aaPredicted RBP17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 TMEM211Q6ICI0 200 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 REEP3Q6NUK4 255 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 VRK2Q86Y07 508 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 ULK2Q8IYT8 1036 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 C11orf65Q8NCR3 313 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 OR8J3Q8NGG0 315 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 OR10A6Q8NH74 314 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 GPR119Q8TDV5 335 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 CMTM5Q96DZ9 223 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 WDYHV1Q96HA8 205 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 CCDC120Q96HB5 630 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 KLHDC3Q9BQ90 382 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 PRDM14Q9GZV8 571 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 KAT8Q9H7Z6 458 aaKnown RBP17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 ZNF232Q9UNY5 417 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 ANGPT4Q9Y264 503 aa17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 SPTAN1Q13813 2472 aaKnown RBP17.79■□□□□ 0.44
SHKBP1-214ENST00000597396 AHRRA9YTQ3 701 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 H0Y3Z8 333 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 H3BML4 177 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 HOXD4P09016 255 aaPredicted RBP17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 ZNF17P17021 662 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 PGCP20142 388 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 PRDX6P30041 224 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 PTGER4P35408 488 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 LHX2P50458 406 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 RBBP4Q09028 425 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 SF3B4Q15427 424 aaKnown RBP eCLIP17.78■□□□□ 0.441e-6■■■■■ 60
SHKBP1-214ENST00000597396 RABL3Q5HYI8 236 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 MRPL2Q5T653 305 aaKnown RBP17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 KRT73Q86Y46 540 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 GTPBP8Q8N3Z3 284 aaPredicted RBP17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 HIPK4Q8NE63 616 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 FAM71CQ8NEG0 241 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 SMPDL3BQ92485 455 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 CNOT9Q92600 299 aaKnown RBP17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 ARSGQ96EG1 525 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 RNF145Q96MT1 663 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 LRRC37BQ96QE4 947 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 ECSITQ9BQ95 431 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 EFCAB1Q9HAE3 211 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 STOML1Q9UBI4 398 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 ZNF443Q9Y2A4 671 aaPredicted RBP17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 IFT52Q9Y366 437 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 ZNF337Q9Y3M9 751 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 DOCK7Q96N67 2140 aa17.78■□□□□ 0.44
SHKBP1-214ENST00000597396 C7orf72A4D263 438 aa17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 BCAS1O75363 584 aaPredicted RBP17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 LDLRP01130 860 aa17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 THBS1P07996 1170 aa17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 LINGO3P0C6S8 592 aa17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 ETS2P15036 469 aa17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 CPN1P15169 458 aa17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 RYKP34925 604 aa17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 EIF1P41567 113 aaKnown RBP17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 FOXF1Q12946 379 aa17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 ART3Q13508 389 aa17.77■□□□□ 0.44
SHKBP1-214ENST00000597396 QPRTQ15274 297 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms