RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, human

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM28-205	ENST00000595028	RAB8B	Q92930	207 aa		13.59	□□□□□ -0.23
TRIM28-205	ENST00000595028	ADGRG7	Q96K78	797 aa		13.59	□□□□□ -0.23
TRIM28-205	ENST00000595028	ZNF559	Q9BR84	538 aa		13.59	□□□□□ -0.23
TRIM28-205	ENST00000595028	SLCO1B3	Q9NPD5	702 aa		13.59	□□□□□ -0.23
TRIM28-205	ENST00000595028	STOML1	Q9UBI4	398 aa		13.59	□□□□□ -0.23
TRIM28-205	ENST00000595028	KCNE5	Q9UJ90	142 aa		13.59	□□□□□ -0.23
TRIM28-205	ENST00000595028	PACSIN3	Q9UKS6	424 aa		13.59	□□□□□ -0.23
TRIM28-205	ENST00000595028	CARD8	Q9Y2G2	431 aa		13.59	□□□□□ -0.23
TRIM28-205	ENST00000595028	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	SERINC4	A6NH21	518 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	CCDC154	A6NI56	674 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	EIF1AY	O14602	144 aa	Known RBP	13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	FCMR	O60667	390 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	TNFSF13	O75888	250 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	C1QC	P02747	245 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	IL6	P05231	212 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	CRH	P06850	196 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	GUSB	P08236	651 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	FCGR2A	P12318	317 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	ELK4	P28324	431 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	EIF1	P41567	113 aa	Known RBP	13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	SNTB1	Q13884	538 aa	Known RBP	13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	PON3	Q15166	354 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	GPR68	Q15743	365 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	CTU2	Q2VPK5	515 aa	Known RBP	13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	TYW3	Q6IPR3	259 aa	Known RBP	13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	MSANTD1	Q6ZTZ1	278 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	RNF130	Q86XS8	419 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	TMCO5A	Q8N6Q1	288 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	OR9I1	Q8NGQ6	314 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	FNDC9	Q8TBE3	224 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	DYDC1	Q8WWB3	177 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	XAGE5	Q8WWM1	108 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	OIT3	Q8WWZ8	545 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	PIGM	Q9H3S5	423 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	TMEM185B	Q9H7F4	350 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	POLE3	Q9NRF9	147 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	MKLN1	Q9UL63	735 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	WDR45	Q9Y484	360 aa		13.58	□□□□□ -0.24
TRIM28-205	ENST00000595028	MPDZ	O75970	2070 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	AKAP6	Q13023	2319 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	GTPBP1	O00178	669 aa	Known RBP	13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	HMGN4	O00479	90 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	POLR3G	O15318	223 aa	Predicted RBP	13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	ZNF264	O43296	627 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	EIF4E2	O60573	245 aa	Known RBP	13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	UGT2B17	O75795	530 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	TGDS	O95455	350 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	NUDT14	O95848	222 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	CD1E	P15812	388 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	ME2	P23368	584 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	KIR2DL3	P43628	341 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	EIF1AX	P47813	144 aa	Known RBP	13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	CCR4	P51679	360 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	RAC1	P63000	192 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	PPP2R2A	P63151	447 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	EEF1A1	P68104	462 aa	Known RBP	13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	TXNL4A	P83876	142 aa	Known RBP	13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	HPCA	P84074	193 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	SORD	Q00796	357 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	SKP2	Q13309	424 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	TIGD2	Q4W5G0	525 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	EEF1A1P5	Q5VTE0	462 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	FRRS1	Q6ZNA5	592 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	ZNF619	Q8N2I2	560 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	MIER2	Q8N344	545 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	TOR1AIP2	Q8NFQ8	470 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	OR10D3	Q8NH80	312 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	ROPN1L	Q96C74	230 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	ARSG	Q96EG1	525 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	SAP130	Q9H0E3	1048 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	RNF122	Q9H9V4	155 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	TCF7L2	Q9NQB0	619 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	INTS9	Q9NV88	658 aa	Known RBP	13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	CRIM1	Q9NZV1	1036 aa		13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	GPC6	Q9Y625	555 aa	Predicted RBP	13.57	□□□□□ -0.24
TRIM28-205	ENST00000595028	ACAN	P16112	2415 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	ABCA4	P78363	2273 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	HRNR	Q86YZ3	2850 aa	Predicted RBP	13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	PRAMEF27	A3QJZ7	478 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	RFXANK	O14593	260 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	ADAMDEC1	O15204	470 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	SASH3	O75995	380 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	NTN1	O95631	604 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	GSN	P06396	782 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	PRKCA	P17252	672 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	IL11	P20809	199 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	ADH6	P28332	368 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	CPA2	P48052	419 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	MRPL19	P49406	292 aa	Known RBP	13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	ANXA11	P50995	505 aa	Known RBP	13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	FGFBP1	Q14512	234 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	GUSBP1	Q15486	140 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	TOMM34	Q15785	309 aa	Predicted RBP	13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	MAPK14	Q16539	360 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	SGCB	Q16585	318 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	ZNF621	Q6ZSS3	439 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	ESPNL	Q6ZVH7	1005 aa		13.56	□□□□□ -0.24
TRIM28-205	ENST00000595028	LUZP2	Q86TE4	346 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms