RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 FCRL2Q96LA5 508 aaPredicted RBP3.86□□□□□ -1.79
LIG3-211ENST00000588713 KCNC2Q96PR1 638 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 KCNS3Q9BQ31 491 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 C19orf43Q9BQ61 176 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 MGME1Q9BQP7 344 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 MARVELD1Q9BSK0 173 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 CCM2Q9BSQ5 444 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 NTMT1Q9BV86 223 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 GPR87Q9BY21 358 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 BARHL1Q9BZE3 327 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 ADAM19Q9H013 955 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 MMP28Q9H239 520 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 CHST8Q9H2A9 424 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 PPA2Q9H2U2 334 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 SPNS1Q9H2V7 528 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 MIXL1Q9H2W2 232 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 RNF167Q9H6Y7 350 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 TRIM45Q9H8W5 580 aaPredicted RBP3.86□□□□□ -1.79
LIG3-211ENST00000588713 AKIRIN1Q9H9L7 192 aaPredicted RBP3.86□□□□□ -1.79
LIG3-211ENST00000588713 PDFQ9HBH1 243 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 HHATLQ9HCP6 504 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 C12orf4Q9NQ89 552 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 MCUBQ9NWR8 336 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 CLN6Q9NWW5 311 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 LYARQ9NX58 379 aaKnown RBP3.86□□□□□ -1.79
LIG3-211ENST00000588713 SIRT5Q9NXA8 310 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 WWOXQ9NZC7 414 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 EMC3Q9P0I2 261 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 GALPQ9UBC7 116 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 SEC14L3Q9UDX4 400 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 TEKT2Q9UIF3 430 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 SLC25A13Q9UJS0 675 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 CDC42EP3Q9UKI2 254 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 SSR3Q9UNL2 185 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 RABL2BQ9UNT1 228 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 SCML2Q9UQR0 700 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 HSPB11Q9Y547 144 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 ASB1Q9Y576 335 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 SNX8Q9Y5X2 465 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 HS3ST4Q9Y661 456 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 FKBP7Q9Y680 259 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 ARL5AQ9Y689 179 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 DSPPQ9NZW4 1301 aa3.86□□□□□ -1.79
LIG3-211ENST00000588713 SONP18583 2426 aaKnown RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 CACNA1CQ13936 2221 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 A0A1B0GVI7 797 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 FABP12A6NFH5 140 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 NCF1BA6NI72 391 aaPredicted RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 C2orf81A6NN90 581 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 WASHC1A8K0Z3 465 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 NCF1CA8MVU1 366 aaPredicted RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 MAGEB17A8MXT2 336 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 I3L521 148 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 TNFRSF11BO00300 401 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 LYRM1O43325 122 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 NDUFA2O43678 99 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 PRKYO43930 277 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 PRAMEF11O60813 436 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 RAMP2O60895 175 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 NIPSNAP2O75323 286 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 SNAPC5O75971 98 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 ADAP00813 363 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 TNFP01375 233 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 IFNA7P01567 189 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 TSPAN19P0C672 248 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 OR56A5P0C7T3 313 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 HSMCR30P0CW71 290 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 RRASP10301 218 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 SLC2A2P11168 524 aaPredicted RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 ANXA3P12429 323 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 MYCLP1P12525 358 aaPredicted RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 DDX5P17844 614 aaKnown RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 BMP7P18075 431 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 SDC1P18827 310 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 TNNI3P19429 210 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 C4BPBP20851 252 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 PRPS1L1P21108 318 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 EPHA2P29317 976 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 HMGCLP35914 325 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 CDKN2CP42773 168 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 CRYBB2P43320 205 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 IDH2P48735 452 aaKnown RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 CLCN7P51798 805 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 NUDT6P53370 316 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 ATP12AP54707 1039 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 YBEYP58557 167 aaPredicted RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 MAXP61244 160 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 KCNJ10P78508 379 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 HOXC5Q00444 222 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 SPIBQ01892 262 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 HSF2Q03933 536 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 ITKQ08881 620 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 RBBP4Q09028 425 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 SLC10A7Q0GE19 358 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 HNRNPA0Q13151 305 aaKnown RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 TP53BP2Q13625 1128 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 SNTB1Q13884 538 aaKnown RBP3.85□□□□□ -1.79
LIG3-211ENST00000588713 NCF4Q15080 339 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 AANATQ16613 207 aa3.85□□□□□ -1.79
LIG3-211ENST00000588713 WSCD2Q2TBF2 565 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms