RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 GPR4P46093 362 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 RFX3P48380 749 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 ENTPD1P49961 510 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 GPR143P51810 404 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 RAB15P59190 212 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 VBP1P61758 197 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 PSPHP78330 225 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 BNC1Q01954 994 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 ACY1Q03154 408 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 TMED1Q13445 227 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 SHBQ15464 509 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 MED22Q15528 200 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 ELAVL1Q15717 326 aaKnown RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 CT45A2Q5DJT8 189 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 ARMC4Q5T2S8 1044 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 PMS2CLQ68D20 193 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 TMEM71Q6P5X7 295 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 ZAR1Q86SH2 424 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 GID4Q8IVV7 300 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 TMEM151BQ8IW70 566 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 SHISA5Q8N114 240 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 SLC34A3Q8N130 599 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 METTL27Q8N6F8 245 aaPredicted RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 NANOGP1Q8N7R0 232 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 ZNF614Q8N883 585 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 BCORP1Q8N888 145 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 Q8N9G6 341 aaPredicted RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 ZNF527Q8NB42 609 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 OR52I1Q8NGK6 324 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 OR1L3Q8NH93 324 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 OR14A16Q8NHC5 309 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 RNF217Q8TC41 542 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 FANK1Q8TC84 345 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 CNOT9Q92600 299 aaKnown RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 DCSTAMPQ9H295 470 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 FN3KQ9H479 309 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 ZNF304Q9HCX3 659 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 HMG20AQ9NP66 347 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 MKKSQ9NPJ1 570 aaPredicted RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 PRMT8Q9NR22 394 aaPredicted RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 SIDT1Q9NXL6 827 aaKnown RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 DNAJB12Q9NXW2 375 aaKnown RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 H2AFY2Q9P0M6 372 aaPredicted RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 SRPK3Q9UPE1 567 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 TMEM184BQ9Y519 407 aaPredicted RBP10.4□□□□□ -0.74
LIG3-204ENST00000585740 ADAMTS20P59510 1910 aa10.4□□□□□ -0.74
LIG3-204ENST00000585740 PI4KAP42356 2102 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 ACACBO00763 2458 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 IGKV3D-11A0A0A0MRZ8 115 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 A0A1B0GWA3 101 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 A0A1B0GX78 115 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 TMEM129A0AVI4 362 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 FRG2CA6NGY1 282 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 SERINC4A6NH21 518 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 CLDN25C9JDP6 229 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 CSO75390 466 aaKnown RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 PPM1BO75688 479 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 IL33O95760 270 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 IGKV1D-16P01601 117 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 CLPSP04118 112 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 ANKRD34CP0C6C1 535 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 HSMCR30P0CW71 290 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 ENDOUP21128 410 aaKnown RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 GADD45AP24522 165 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 ACAA2P42765 397 aaKnown RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 CDH11P55287 796 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 NCS1P62166 190 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 LSM3P62310 102 aaKnown RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 LSM11P83369 360 aaKnown RBP eCLIP10.39□□□□□ -0.75
LIG3-204ENST00000585740 CFHR1Q03591 330 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 MLLT11Q13015 90 aaPredicted RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 KCNAB1Q14722 419 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 SPHARQ15513 63 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 CLPPQ16740 277 aaPredicted RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 TSTQ16762 297 aaKnown RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 RSPO4Q2I0M5 234 aaPredicted RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 SNAP47Q5SQN1 464 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 ARHGAP40Q5TG30 622 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 NXNL2Q5VZ03 156 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 ULK3Q6PHR2 472 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 ZC3H14Q6PJT7 736 aaKnown RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 C19orf48Q6RUI8 117 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 RABEPKQ7Z6M1 372 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 AMER2Q8N7J2 671 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 OR4N2Q8NGD1 307 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 OR4Q3Q8NH05 313 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 OR4C6Q8NH72 309 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 NDNFQ8TB73 568 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 DNAJA4Q8WW22 397 aaPredicted RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 DAZLQ92904 295 aaKnown RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 CCDC74AQ96AQ1 378 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 BPIFA2Q96DR5 249 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 RNFT2Q96EX2 444 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 SENP5Q96HI0 755 aaPredicted RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 SAMD8Q96LT4 415 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 OR52D1Q9H346 318 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 SIAEQ9HAT2 523 aa10.39□□□□□ -0.75
LIG3-204ENST00000585740 PNO1Q9NRX1 252 aaKnown RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 CCDC59Q9P031 241 aaKnown RBP10.39□□□□□ -0.75
LIG3-204ENST00000585740 SEC14L4Q9UDX3 406 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms