RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ESPNLQ6ZVH7 1005 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 OLIG3Q7RTU3 272 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 C6orf120Q7Z4R8 191 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 MTERF4Q7Z6M4 381 aaKnown RBP18.31■□□□□ 0.52
SHMT1-209ENST00000582653 ZNF614Q8N883 585 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 ZNF527Q8NB42 609 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 OR6K3Q8NGY3 331 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 OSTF1Q92882 214 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 MOAP1Q96BY2 351 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 ZNF524Q96C55 264 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 SORT1Q99523 831 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 KLHL4Q9C0H6 718 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 SSU72Q9NP77 194 aaKnown RBP18.31■□□□□ 0.52
SHMT1-209ENST00000582653 KCNK9Q9NPC2 374 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 GLRX2Q9NS18 164 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 MCTS1Q9ULC4 181 aaKnown RBP18.31■□□□□ 0.52
SHMT1-209ENST00000582653 ICAM5Q9UMF0 924 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 EMC9Q9Y3B6 208 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 RAP2CQ9Y3L5 183 aa18.31■□□□□ 0.52
SHMT1-209ENST00000582653 NPIPB9F8W1W9 429 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 GTPBP1O00178 669 aaKnown RBP18.3■□□□□ 0.52
SHMT1-209ENST00000582653 SMPD2O60906 423 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 SS18L1O75177 396 aaPredicted RBP18.3■□□□□ 0.52
SHMT1-209ENST00000582653 INHBBP09529 407 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 MYZAPP0CAP1 466 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 MATN1P21941 496 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 ME2P23368 584 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 RPL14P50914 215 aaKnown RBP18.3■□□□□ 0.52
SHMT1-209ENST00000582653 P2RX1P51575 399 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 SMU1Q2TAY7 513 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 P3H2Q8IVL5 708 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 RFWD2Q8NHY2 731 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 FBXO27Q8NI29 283 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 ROBO4Q8WZ75 1007 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 ZIM3Q96PE6 472 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 SDF2Q99470 211 aa18.3■□□□□ 0.52
SHMT1-209ENST00000582653 UQCRHLA0A096LP55 91 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 TM9SF1O15321 606 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 ZNF500O60304 480 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-209ENST00000582653 SOX30O94993 753 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 PPP3CBP16298 524 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 LOXP28300 417 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-209ENST00000582653 ADSLP30566 484 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-209ENST00000582653 CTBP2P56545 445 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 CARD18P57730 90 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 TNFAIP8L3Q5GJ75 292 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 GTF2IRD2BQ6EKJ0 949 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 PRSS57Q6UWY2 283 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 GTF2IRD2Q86UP8 949 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 ANKRD46Q86W74 232 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 OR4A15Q8NGL6 344 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 KLHL15Q96M94 604 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 SMR3AQ99954 134 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 NUF2Q9BZD4 464 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 DPY30Q9C005 99 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 PNPOQ9NVS9 261 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 RAB21Q9UL25 225 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-209ENST00000582653 DTNAQ9Y4J8 743 aa18.29■□□□□ 0.52
SHMT1-209ENST00000582653 FLNAP21333 2647 aaKnown RBP18.28■□□□□ 0.52
SHMT1-209ENST00000582653 NUP214P35658 2090 aaPredicted RBP18.28■□□□□ 0.52
SHMT1-209ENST00000582653 RNF103-CHMP3A0A140T963 221 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 H3BNH8 94 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 ZNF195O14628 629 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 FCMRO60667 390 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 EIF1P41567 113 aaKnown RBP18.28■□□□□ 0.52
SHMT1-209ENST00000582653 PHC1P78364 1004 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 STX3Q13277 289 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 GPR68Q15743 365 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 PDSS1Q5T2R2 415 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 PDZK1Q5T2W1 519 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 BHLHB9Q6PI77 547 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 C20orf204Q6ZNR8 217 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 BEND4Q6ZU67 534 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 ATP6V1C2Q8NEY4 427 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 GPR119Q8TDV5 335 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 ARSGQ96EG1 525 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 HS3ST6Q96QI5 342 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 PAIP2Q9BPZ3 127 aaKnown RBP18.28■□□□□ 0.52
SHMT1-209ENST00000582653 SRXN1Q9BYN0 137 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 C12orf49Q9H741 205 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 FANCFQ9NPI8 374 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 KCNE5Q9UJ90 142 aa18.28■□□□□ 0.52
SHMT1-209ENST00000582653 CENPVL1A0A0U1RR11 272 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 RNASET2O00584 256 aaKnown RBP18.27■□□□□ 0.52
SHMT1-209ENST00000582653 KLF4O43474 513 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 SCN2BO60939 215 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 CPSF4O95639 269 aaKnown RBP18.27■□□□□ 0.52
SHMT1-209ENST00000582653 THBDP07204 575 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 PRKCAP17252 672 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 ADH6P28332 368 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 LTBQ06643 244 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 TMEM176BQ3YBM2 270 aaPredicted RBP18.27■□□□□ 0.52
SHMT1-209ENST00000582653 STAC2Q6ZMT1 411 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 TMCO5AQ8N6Q1 288 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 OR8J2Q8NGG1 315 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 SLC35G5Q96KT7 338 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 OR51I1Q9H343 314 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 UBTD1Q9HAC8 227 aa18.27■□□□□ 0.52
SHMT1-209ENST00000582653 MKLN1Q9UL63 735 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms