RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 ZNF285Q96NJ3 590 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 MS4A4EQ96PG1 132 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 ZNF347Q96SE7 839 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 PELOQ9BRX2 385 aaKnown RBP9.43□□□□□ -0.9
SS18-221ENST00000582448 OSBPL11Q9BXB4 747 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 OSBPL10Q9BXB5 764 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 ACTRT3Q9BYD9 372 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 KRTAP4-7Q9BYR0 210 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 OR51I1Q9H343 314 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 IL1RAPQ9NPH3 570 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 CUTCQ9NTM9 273 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 SH3BGRL2Q9UJC5 107 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 OAZ3Q9UMX2 235 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 FAM32AQ9Y421 112 aaKnown RBP9.43□□□□□ -0.9
SS18-221ENST00000582448 CENPEQ02224 2701 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 CCDC88CQ9P219 2028 aa9.43□□□□□ -0.9
SS18-221ENST00000582448 M0QX08 132 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 PLOD2O00469 737 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 CYR61O00622 381 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 COQ9O75208 318 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 RASAL1O95294 804 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 ATP1B1P05026 303 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 HMGN2P05204 90 aaKnown RBP9.42□□□□□ -0.9
SS18-221ENST00000582448 IFI6P09912 130 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 TFPTP0C1Z6 253 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 SLC35E2P0CK97 266 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 OR12D1P0DN82 309 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 SOX8P57073 446 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 FOLH1Q04609 750 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 EPS8Q12929 822 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 LASP1Q14847 261 aaKnown RBP9.42□□□□□ -0.9
SS18-221ENST00000582448 NRF1Q16656 503 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 ZNF750Q32MQ0 723 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 VWA2Q5GFL6 755 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 PRAMEF8Q5VWM4 474 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 PRAMEF7Q5VXH5 474 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 PRSS41Q7RTY9 318 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 C16orf62Q7Z3J2 963 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 GDF7Q7Z4P5 450 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 MRGPRGQ86SM5 289 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 HIPK1Q86Z02 1210 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 ARMC8Q8IUR7 673 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 OR4N5Q8IXE1 308 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 KBTBD2Q8IY47 623 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 FAM86B1Q8N7N1 296 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 BCORP1Q8N888 145 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 SYT8Q8NBV8 401 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 OR5T3Q8NGG3 340 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 SUN3Q8TAQ9 357 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 MIPOL1Q8TD10 442 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 GEMIN6Q8WXD5 167 aaKnown RBP9.42□□□□□ -0.9
SS18-221ENST00000582448 RAB8BQ92930 207 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 UCN3Q969E3 161 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 TMBIM1Q969X1 311 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 RBM18Q96H35 190 aaKnown RBP9.42□□□□□ -0.9
SS18-221ENST00000582448 TMEM19Q96HH6 336 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 C10orf90Q96M02 699 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 CCDC140Q96MF4 163 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 NR1H4Q96RI1 486 aaPredicted RBP9.42□□□□□ -0.9
SS18-221ENST00000582448 CSF3RQ99062 836 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 LHPPQ9H008 270 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 REEP1Q9H902 201 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 EQTNQ9NQ60 294 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 HCN3Q9P1Z3 774 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 SLC13A4Q9UKG4 626 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 PMF1-BGLAPU3KQ54 211 aa9.42□□□□□ -0.9
SS18-221ENST00000582448 PRRC2CQ9Y520 2896 aaKnown RBP9.42□□□□□ -0.9
SS18-221ENST00000582448 A0A087WV62 115 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 A0A0G2JPF8 293 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 SYNDIG1LA6NDD5 238 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 WASHC1A8K0Z3 465 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 HNRNPCL2B2RXH8 293 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 HNRNPCL3B7ZW38 293 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 HMGN4O00479 90 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 CCL21O00585 134 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 CTNSO60931 367 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 PGM3O95394 542 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 HPRP00739 348 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 IFNW1P05000 195 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 HNRNPCL4P0DMR1 293 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 ZNF26P17031 533 aaPredicted RBP9.41□□□□□ -0.9
SS18-221ENST00000582448 MMP11P24347 488 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 MAGEA2P43356 314 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 GABRA4P48169 554 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 HSD17B7P56937 341 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 ARG2P78540 354 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 SERTAD2Q14140 314 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 ZNHIT3Q15649 155 aaPredicted RBP9.41□□□□□ -0.9
SS18-221ENST00000582448 GPAT3Q53EU6 434 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 OR2T5Q6IEZ7 315 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 GFRALQ6UXV0 394 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 PIWIL3Q7Z3Z3 882 aaKnown RBP9.41□□□□□ -0.9
SS18-221ENST00000582448 STK32CQ86UX6 486 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 CYP4Z1Q86W10 505 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 LGI4Q8N135 537 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 Q8N1Y9 231 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 METTL27Q8N6F8 245 aaPredicted RBP9.41□□□□□ -0.9
SS18-221ENST00000582448 OR2T29Q8NH02 315 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 OR5K1Q8NHB7 308 aa9.41□□□□□ -0.9
SS18-221ENST00000582448 MAGEE2Q8TD90 523 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms