RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ME2P23368 584 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 EIF1P41567 113 aaKnown RBP21.49■■□□□ 1.03
SHMT1-206ENST00000579558 EIF1AXP47813 144 aaKnown RBP21.49■■□□□ 1.03
SHMT1-206ENST00000579558 FUT5Q11128 374 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 LUZP2Q86TE4 346 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 MIER2Q8N344 545 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 TMEM185BQ9H7F4 350 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 POLE3Q9NRF9 147 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 KCNE5Q9UJ90 142 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 TNFSF12-TNFSF13A0A0A6YY99 330 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 CENPVL1A0A0U1RR11 272 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 POLR3GO15318 223 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-206ENST00000579558 TNFSF13O75888 250 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 TGDSO95455 350 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 CPA2P48052 419 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 ANXA11P50995 505 aaKnown RBP21.48■■□□□ 1.03
SHMT1-206ENST00000579558 CCR4P51679 360 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 HPCAP84074 193 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 GPAT3Q53EU6 434 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 TYW3Q6IPR3 259 aaKnown RBP21.48■■□□□ 1.03
SHMT1-206ENST00000579558 PPP4R4Q6NUP7 873 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 DNAJC14Q6Y2X3 702 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-206ENST00000579558 KIF18BQ86Y91 864 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 ZZZ3Q8IYH5 903 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 CNEP1R1Q8N9A8 125 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 TOR1AIP2Q8NFQ8 470 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 OR9I1Q8NGQ6 314 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 OR10D3Q8NH80 312 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 GPR119Q8TDV5 335 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 RBM24Q9BX46 236 aaKnown RBP21.48■■□□□ 1.03
SHMT1-206ENST00000579558 TCF7L2Q9NQB0 619 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 PACSIN3Q9UKS6 424 aa21.48■■□□□ 1.03
SHMT1-206ENST00000579558 GPC6Q9Y625 555 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-206ENST00000579558 HMGN4O00479 90 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 CYP7B1O75881 506 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 GUSBP08236 651 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 FCGR2AP12318 317 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 ELK4P28324 431 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 POLR2JP52435 117 aaKnown RBP21.47■■□□□ 1.03
SHMT1-206ENST00000579558 TXNL4AP83876 142 aaKnown RBP21.47■■□□□ 1.03
SHMT1-206ENST00000579558 TOMM34Q15785 309 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-206ENST00000579558 CTU2Q2VPK5 515 aaKnown RBP21.47■■□□□ 1.03
SHMT1-206ENST00000579558 FRRS1Q6ZNA5 592 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 ZNF619Q8N2I2 560 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 OR5W2Q8NH69 310 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 FBXO27Q8NI29 283 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 PNPT1Q8TCS8 783 aaKnown RBP21.47■■□□□ 1.03
SHMT1-206ENST00000579558 ADGRG7Q96K78 797 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 PRRG4Q9BZD6 226 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 RMND5AQ9H871 391 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 RNF122Q9H9V4 155 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 PAQR5Q9NXK6 330 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-206ENST00000579558 CRIM1Q9NZV1 1036 aa21.47■■□□□ 1.03
SHMT1-206ENST00000579558 TNFSF11O14788 317 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 ANP32DO95626 131 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 KRT75O95678 551 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 CSTAP01040 98 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 CAPN3P20807 821 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 IL11P20809 199 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 ADH6P28332 368 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 IDH3AP50213 366 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 STX1BP61266 288 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 SIRPAP78324 504 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 CBFBQ13951 182 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 MAPK14Q16539 360 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 TIGD2Q4W5G0 525 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 PDSS1Q5T2R2 415 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 VWA1Q6PCB0 445 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 MSANTD1Q6ZTZ1 278 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 ESPNLQ6ZVH7 1005 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 EIF3MQ7L2H7 374 aaKnown RBP21.46■■□□□ 1.03
SHMT1-206ENST00000579558 TMEM200AQ86VY9 491 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 LILRA2Q8N149 483 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 OR2V1Q8NHB1 315 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 OIT3Q8WWZ8 545 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 ARSGQ96EG1 525 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 KLHL15Q96M94 604 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 LAT2Q9GZY6 243 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 SAP130Q9H0E3 1048 aa21.46■■□□□ 1.03
SHMT1-206ENST00000579558 A0A0J9YW62 118 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 FAM234BA2RU67 622 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 PRAMEF27A3QJZ7 478 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 ADAMDEC1O15204 470 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 CXCL13O43927 109 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 SMNDC1O75940 238 aaKnown RBP eCLIP21.45■■□□□ 1.02
SHMT1-206ENST00000579558 SASH3O75995 380 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 AQP8O94778 261 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 H6PDO95479 791 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 UBTFL6P0CB48 400 aaPredicted RBP21.45■■□□□ 1.02
SHMT1-206ENST00000579558 PRKCAP17252 672 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 SFTPDP35247 375 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 SORDQ00796 357 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 SKP2Q13309 424 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 FGFBP1Q14512 234 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 QPRTQ15274 297 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 COX20Q5RI15 118 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 HBMQ6B0K9 141 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 STARD4Q96DR4 205 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 ITCHQ96J02 903 aa21.45■■□□□ 1.02
SHMT1-206ENST00000579558 EBF4Q9BQW3 602 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms