RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PACSIN3Q9UKS6 424 aa13.35□□□□□ -0.27
SS18-212ENST00000579061 LIPT1Q9Y234 373 aa13.35□□□□□ -0.27
SS18-212ENST00000579061 WDR45Q9Y484 360 aa13.35□□□□□ -0.27
SS18-212ENST00000579061 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 ENO4A6NNW6 628 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 C9JVG2 144 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 ETV2O00321 342 aaPredicted RBP13.34□□□□□ -0.27
SS18-212ENST00000579061 HMGN4O00479 90 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 EIF1AYO14602 144 aaKnown RBP13.34□□□□□ -0.27
SS18-212ENST00000579061 MSTNO14793 375 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 OIP5O43482 229 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 KIAA0513O60268 411 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 FCMRO60667 390 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 DNAJA2O60884 412 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 UGT2B17O75795 530 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 TNFSF13O75888 250 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 KRT75O95678 551 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 NUDT14O95848 222 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 ZCCHC18P0CG32 403 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 PPP2R2AP63151 447 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 CBFBQ13951 182 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 PON3Q15166 354 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 SGCBQ16585 318 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 CTU2Q2VPK5 515 aaKnown RBP13.34□□□□□ -0.27
SS18-212ENST00000579061 SLC25A53Q5H9E4 307 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 TYW3Q6IPR3 259 aaKnown RBP13.34□□□□□ -0.27
SS18-212ENST00000579061 ZNF619Q8N2I2 560 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 MIER2Q8N344 545 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 OR5W2Q8NH69 310 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 FNDC9Q8TBE3 224 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 DYDC1Q8WWB3 177 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 PMM1Q92871 262 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 RAB8BQ92930 207 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 ZNF845Q96IR2 970 aaPredicted RBP13.34□□□□□ -0.27
SS18-212ENST00000579061 MRGPRX4Q96LA9 322 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 NPAS1Q99742 590 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 KLHDC3Q9BQ90 382 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 INPP5KQ9BT40 448 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 CCDC28BQ9BUN5 200 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 RBM24Q9BX46 236 aaKnown RBP13.34□□□□□ -0.27
SS18-212ENST00000579061 RMND5AQ9H871 391 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 SLCO1B3Q9NPD5 702 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 TCF7L2Q9NQB0 619 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 INTS9Q9NV88 658 aaKnown RBP13.34□□□□□ -0.27
SS18-212ENST00000579061 KCNE5Q9UJ90 142 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 MKLN1Q9UL63 735 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 SLC35A3Q9Y2D2 325 aa13.34□□□□□ -0.27
SS18-212ENST00000579061 ANKRD17O75179 2603 aaKnown RBP13.34□□□□□ -0.27
SS18-212ENST00000579061 A0A0J9YW62 118 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 FAM234BA2RU67 622 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 A8MXE2 369 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 RFXANKO14593 260 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 POLR3GO15318 223 aaPredicted RBP13.33□□□□□ -0.28
SS18-212ENST00000579061 NTN1O95631 604 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 CSTAP01040 98 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 CDKN2CP42773 168 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 KIR2DL2P43627 348 aaPredicted RBP13.33□□□□□ -0.28
SS18-212ENST00000579061 EIF1AXP47813 144 aaKnown RBP13.33□□□□□ -0.28
SS18-212ENST00000579061 POLR2JP52435 117 aaKnown RBP13.33□□□□□ -0.28
SS18-212ENST00000579061 CASP9P55211 416 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 IRX1P78414 480 aaPredicted RBP13.33□□□□□ -0.28
SS18-212ENST00000579061 FUT5Q11128 374 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 FOXF1Q12946 379 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 SKP2Q13309 424 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 GUSBP1Q15486 140 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 FRRS1Q6ZNA5 592 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 EIF3MQ7L2H7 374 aaKnown RBP13.33□□□□□ -0.28
SS18-212ENST00000579061 RNF130Q86XS8 419 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 FAM71CQ8NEG0 241 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 OR10D3Q8NH80 312 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 OR2V1Q8NHB1 315 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 FBXO27Q8NI29 283 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 ZFP90Q8TF47 636 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 STARD4Q96DR4 205 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 ITCHQ96J02 903 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 MARK4Q96L34 752 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 TRNT1Q96Q11 434 aaKnown RBP13.33□□□□□ -0.28
SS18-212ENST00000579061 CRIM1Q9NZV1 1036 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 MCTS1Q9ULC4 181 aaKnown RBP13.33□□□□□ -0.28
SS18-212ENST00000579061 SPG11Q96JI7 2443 aa13.33□□□□□ -0.28
SS18-212ENST00000579061 POLQO75417 2590 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 PRAMEF27A3QJZ7 478 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 FAM221AA4D161 298 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 TUBAL3A6NHL2 446 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 GJE1A6NN92 205 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 GOSR1O95249 250 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 SYNGR4O95473 234 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 PRKCAP17252 672 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 CPA2P48052 419 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 KRTAP10-9P60411 292 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 STX1BP61266 288 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 HPCAP84074 193 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 DAZAP2Q15038 168 aaPredicted RBP13.32□□□□□ -0.28
SS18-212ENST00000579061 TOMM34Q15785 309 aaPredicted RBP13.32□□□□□ -0.28
SS18-212ENST00000579061 NDUFAF6Q330K2 333 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 LRRC74BQ6ZQY2 392 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 LUZP2Q86TE4 346 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 LILRA2Q8N149 483 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 TMCO5AQ8N6Q1 288 aa13.32□□□□□ -0.28
SS18-212ENST00000579061 CKAP2Q8WWK9 683 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms