RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 NR2F1P10589 423 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 RPS4Y1P22090 263 aaKnown RBP17.43■□□□□ 0.38
SS18-208ENST00000577751 PGM1P36871 562 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 CLDN20P56880 219 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 HPCAP84074 193 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 FADDQ13158 208 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 SKP2Q13309 424 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 HSPB2Q16082 182 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 SP5Q6BEB4 398 aaPredicted RBP17.43■□□□□ 0.38
SS18-208ENST00000577751 DLEU7Q6UYE1 221 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 EIF3MQ7L2H7 374 aaKnown RBP17.43■□□□□ 0.38
SS18-208ENST00000577751 LIX1LQ8IVB5 337 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 NAXEQ8NCW5 288 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 FAM71CQ8NEG0 241 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 OR5W2Q8NH69 310 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 SLC38A5Q8WUX1 472 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 ZNF524Q96C55 264 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 RNF145Q96MT1 663 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 QRSL1Q9H0R6 528 aaKnown RBP17.43■□□□□ 0.38
SS18-208ENST00000577751 RAD21L1Q9H4I0 556 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 MRGBPQ9NV56 204 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 CLCF1Q9UBD9 225 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 LEF1Q9UJU2 399 aaPredicted RBP17.43■□□□□ 0.38
SS18-208ENST00000577751 SLC35A3Q9Y2D2 325 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 DSPPQ9NZW4 1301 aa17.43■□□□□ 0.38
SS18-208ENST00000577751 HCFC1P51610 2035 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 CLCA1A8K7I4 914 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 ETV2O00321 342 aaPredicted RBP17.42■□□□□ 0.38
SS18-208ENST00000577751 IL2RAP01589 272 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 ADH6P28332 368 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 EIF1P41567 113 aaKnown RBP17.42■□□□□ 0.38
SS18-208ENST00000577751 EEFSECP57772 596 aaKnown RBP17.42■□□□□ 0.38
SS18-208ENST00000577751 KCNJ10P78508 379 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 PLAURQ03405 335 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 TOMM34Q15785 309 aaPredicted RBP17.42■□□□□ 0.38
SS18-208ENST00000577751 SLC25A53Q5H9E4 307 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 POMZP3Q6PJE2 187 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 GGNQ86UU5 652 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 UBQLNLQ8IYU4 475 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 DPP10Q8N608 796 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 MEIOBQ8N635 442 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 WNT2BQ93097 391 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 UCK2Q9BZX2 261 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 CHST11Q9NPF2 352 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.42■□□□□ 0.38
SS18-208ENST00000577751 CALML5Q9NZT1 146 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 NDUFAF1Q9Y375 327 aa17.42■□□□□ 0.38
SS18-208ENST00000577751 GPC6Q9Y625 555 aaPredicted RBP17.42■□□□□ 0.38
SS18-208ENST00000577751 H0YC42 278 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 BCAS1O75363 584 aaPredicted RBP17.41■□□□□ 0.38
SS18-208ENST00000577751 NTN1O95631 604 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 NUDT14O95848 222 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 BCHEP06276 602 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 SNRPB2P08579 225 aaKnown RBP17.41■□□□□ 0.38
SS18-208ENST00000577751 UBTFL6P0CB48 400 aaPredicted RBP17.41■□□□□ 0.38
SS18-208ENST00000577751 PRKCAP17252 672 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 PPIBP23284 216 aaKnown RBP17.41■□□□□ 0.38
SS18-208ENST00000577751 TPD52P55327 224 aaPredicted RBP17.41■□□□□ 0.38
SS18-208ENST00000577751 RAC1P63000 192 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 TFF3Q07654 80 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 SF3A3Q12874 501 aaKnown RBP eCLIP17.41■□□□□ 0.38
SS18-208ENST00000577751 CBFBQ13951 182 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 HMGN2P46Q86SG4 172 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 RETREG3Q86VR2 466 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 CMIPQ8IY22 773 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 METTL25Q8N6Q8 603 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 C9orf106Q8NAJ2 232 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 C10orf82Q8WW14 230 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 IKZF5Q9H5V7 419 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 SAR1AQ9NR31 198 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 STOML1Q9UBI4 398 aa17.41■□□□□ 0.38
SS18-208ENST00000577751 NBPF19A0A087WUL8 3843 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 CLDN24A6NM45 220 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 C19orf84I3L1E1 186 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 DYNC1I1O14576 645 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 EFNA2O43921 213 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 RCBTB2O95199 551 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 NUDT7P0C024 238 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 GPX2P18283 190 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 ZNF136P52737 540 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 CRISP3P54108 245 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 FOXF1Q12946 379 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 CTU2Q2VPK5 515 aaKnown RBP17.4■□□□□ 0.38
SS18-208ENST00000577751 RUNDC3AQ59EK9 446 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 MED12LQ86YW9 2145 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 C10orf111Q8N326 155 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 TMCO5AQ8N6Q1 288 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 ACBD4Q8NC06 268 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 TMEM19Q96HH6 336 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 MRGPRX4Q96LA9 322 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 TM9SF2Q99805 663 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 TREX2Q9BQ50 279 aaPredicted RBP17.4■□□□□ 0.38
SS18-208ENST00000577751 THUMPD3Q9BV44 507 aaKnown RBP17.4■□□□□ 0.38
SS18-208ENST00000577751 BCL2L10Q9HD36 194 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 A4GALTQ9NPC4 353 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 KCNJ16Q9NPI9 418 aa17.4■□□□□ 0.38
SS18-208ENST00000577751 EXOSC3Q9NQT5 275 aaKnown RBP17.4■□□□□ 0.38
SS18-208ENST00000577751 ZNF629Q9UEG4 869 aaPredicted RBP17.4■□□□□ 0.38
SS18-208ENST00000577751 A0A0G2JPF8 293 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms