RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 GTF2IRD2Q86UP8 949 aa13.79□□□□□ -0.2
NME3-211ENST00000568561 CPNE4Q96A23 557 aaPredicted RBP13.79□□□□□ -0.2
NME3-211ENST00000568561 ZNF524Q96C55 264 aa13.79□□□□□ -0.2
NME3-211ENST00000568561 METTL2AQ96IZ6 378 aaKnown RBP13.79□□□□□ -0.2
NME3-211ENST00000568561 BTBD2Q9BX70 525 aa13.79□□□□□ -0.2
NME3-211ENST00000568561 IQCGQ9H095 443 aaKnown RBP13.79□□□□□ -0.2
NME3-211ENST00000568561 ACSS1Q9NUB1 689 aaPredicted RBP13.79□□□□□ -0.2
NME3-211ENST00000568561 LIPT1Q9Y234 373 aa13.79□□□□□ -0.2
NME3-211ENST00000568561 A0A1W2PP18 115 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 C9JVG2 144 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 ZNF195O14628 629 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 LSM1O15116 133 aaKnown RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 TMCC2O75069 709 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 IGHV4-39P01824 125 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 PABPC4LP0CB38 370 aaKnown RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 BCKDHAP12694 445 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 PTNP21246 168 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 ELK4P28324 431 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 EIF1P41567 113 aaKnown RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 NAA20P61599 178 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 TP53BP2Q13625 1128 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 RNPS1Q15287 305 aaKnown RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 CCDC153Q494R4 210 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 ZNF672Q499Z4 452 aaPredicted RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 LIPMQ5VYY2 423 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 CDC73Q6P1J9 531 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 LRIG3Q6UXM1 1119 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 C10orf107Q8IVU9 208 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 DDIASQ8IXT1 998 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 IFT20Q8IY31 132 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 C4orf33Q8N1A6 199 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 ZNF614Q8N883 585 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 OR7A2PQ8NGA2 310 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 RFWD2Q8NHY2 731 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 SMAP2Q8WU79 429 aaPredicted RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 KISS1RQ969F8 398 aaPredicted RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 ZNF775Q96BV0 537 aaPredicted RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 TRMT61AQ96FX7 289 aaKnown RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 RHOXF2Q9BQY4 288 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 GATA5Q9BWX5 397 aaPredicted RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 REG4Q9BYZ8 158 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 SLCO5A1Q9H2Y9 848 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 ESRP2Q9H6T0 727 aaKnown RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 CXorf36Q9H7Y0 433 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 ANKZF1Q9H8Y5 726 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 HHATLQ9HCP6 504 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 PRSS50Q9UI38 385 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 GDF2Q9UK05 429 aaPredicted RBP13.78□□□□□ -0.2
NME3-211ENST00000568561 ICAM5Q9UMF0 924 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 SNX8Q9Y5X2 465 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 KCNE3Q9Y6H6 103 aa13.78□□□□□ -0.2
NME3-211ENST00000568561 A0A1W2PNR3 127 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 DPRXA6NFQ7 191 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 ZNF814B7Z6K7 855 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 LYZL6O75951 148 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 CHRNGP07510 517 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 NEFHP12036 1026 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 ATP6V1C1P21283 382 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 ADH6P28332 368 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 LCN1P31025 176 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 PCLAFQ15004 111 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 STK11Q15831 433 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 PGGHGQ32M88 737 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 KANK2Q63ZY3 851 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 HEPHL1Q6MZM0 1159 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 BHLHA15Q7RTS1 189 aaPredicted RBP13.77□□□□□ -0.21
NME3-211ENST00000568561 LSRQ86X29 649 aaPredicted RBP13.77□□□□□ -0.21
NME3-211ENST00000568561 TMCO5AQ8N6Q1 288 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 SPATA3Q8NHX4 192 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 ZFP90Q8TF47 636 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 POTEKPQ9BYX7 375 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 PIGUQ9H490 435 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 TIGARQ9NQ88 270 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 DUSP22Q9NRW4 184 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 ING1Q9UK53 422 aaPredicted RBP13.77□□□□□ -0.21
NME3-211ENST00000568561 DNAJC15Q9Y5T4 150 aa13.77□□□□□ -0.21
NME3-211ENST00000568561 COPEO14579 308 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 SCAMP2O15127 329 aaKnown RBP13.76□□□□□ -0.21
NME3-211ENST00000568561 RAMP1O60894 148 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 ADAM11O75078 769 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 PRKD3O94806 890 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 YES1P07947 543 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 LAMP1P11279 417 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 PRKCAP17252 672 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 CRHR1P34998 444 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 IDUAP35475 653 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 HPCAL1P37235 193 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 CCT5P48643 541 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 P2RX1P51575 399 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 CCR4P51679 360 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 KLHL26Q53HC5 615 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 DCST2Q5T1A1 773 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 ZCCHC12Q6PEW1 402 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 AGR3Q8TD06 166 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 GPR119Q8TDV5 335 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 EPS8L3Q8TE67 593 aaKnown RBP13.76□□□□□ -0.21
NME3-211ENST00000568561 HSD17B8Q92506 261 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 ZNF300Q96RE9 604 aaPredicted RBP13.76□□□□□ -0.21
NME3-211ENST00000568561 STACQ99469 402 aa13.76□□□□□ -0.21
NME3-211ENST00000568561 C1orf50Q9BV19 199 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms