RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 RAET1LQ5VY80 246 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 RTL6Q6ICC9 239 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 REEP3Q6NUK4 255 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 ZNF585AQ6P3V2 769 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 CLIP4Q8N3C7 705 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 MARVELD2Q8N4S9 558 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 TMCO5AQ8N6Q1 288 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 CCDC197Q8NCU1 140 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 OR8J3Q8NGG0 315 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 RELTQ969Z4 430 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 WDYHV1Q96HA8 205 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 LRRC37BQ96QE4 947 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.69■□□□□ 0.42
CLN3-225ENST00000566824 GID8Q9NWU2 228 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 DNAJB12Q9NXW2 375 aaKnown RBP17.69■□□□□ 0.42
CLN3-225ENST00000566824 CALML5Q9NZT1 146 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 ZNF443Q9Y2A4 671 aaPredicted RBP17.69■□□□□ 0.42
CLN3-225ENST00000566824 PHF3Q92576 2039 aaKnown RBP17.69■□□□□ 0.42
CLN3-225ENST00000566824 BAHCC1Q9P281 2608 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 CCT8L1PA6NM43 557 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 C5orf58C9J3I9 102 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 H0YC42 278 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 CCL21O00585 134 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 AP3D1O14617 1153 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 PRRG2O14669 202 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 BCKDKO14874 412 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 EFNA2O43921 213 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 DCTN3O75935 186 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 NID1P14543 1247 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 IL7RP16871 459 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 PSMA4P25789 261 aaKnown RBP17.68■□□□□ 0.42
CLN3-225ENST00000566824 PRDX6P30041 224 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 LHX2P50458 406 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 NUDT2P50583 147 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 CCR4P51679 360 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 TPD52P55327 224 aaPredicted RBP17.68■□□□□ 0.42
CLN3-225ENST00000566824 EEF1A1P68104 462 aaKnown RBP17.68■□□□□ 0.42
CLN3-225ENST00000566824 GANABQ14697 944 aaKnown RBP17.68■□□□□ 0.42
CLN3-225ENST00000566824 PRAMEF8Q5VWM4 474 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 PRAMEF7Q5VXH5 474 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 PLXDC2Q6UX71 529 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 PEX5LQ8IYB4 626 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 OR5W2Q8NH69 310 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 BBS10Q8TAM1 723 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 SARAFQ96BY9 339 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 ZNF583Q96ND8 569 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 FAM215AQ9Y5M1 114 aa17.68■□□□□ 0.42
CLN3-225ENST00000566824 GPC6Q9Y625 555 aaPredicted RBP17.68■□□□□ 0.42
CLN3-225ENST00000566824 TMEM247A6NEH6 219 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 TPST1O60507 370 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 DNAJA2O60884 412 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 NUDT14O95848 222 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 EPPINO95925 133 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 OPN1LWP04000 364 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 ZNF41P51814 821 aaPredicted RBP17.67■□□□□ 0.42
CLN3-225ENST00000566824 CLDN15P56746 228 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 FOXF1Q12946 379 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 NCOA6Q14686 2063 aaPredicted RBP17.67■□□□□ 0.42
CLN3-225ENST00000566824 GLIPR1L2Q4G1C9 344 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 FAM91A1Q658Y4 838 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 SERPINA11Q86U17 422 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 SLC15A3Q8IY34 581 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 ULK2Q8IYT8 1036 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 OIT3Q8WWZ8 545 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 PMM1Q92871 262 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 CMTM5Q96DZ9 223 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 RNF145Q96MT1 663 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 PRDM14Q9GZV8 571 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 EFCAB1Q9HAE3 211 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 ALKBH4Q9NXW9 302 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 CAMK2AQ9UQM7 478 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 SLC35A3Q9Y2D2 325 aa17.67■□□□□ 0.42
CLN3-225ENST00000566824 CDHR4A6H8M9 788 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 NME4O00746 187 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 FRS3O43559 492 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 ACTL6AO96019 429 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 PABPC4LP0CB38 370 aaKnown RBP17.66■□□□□ 0.42
CLN3-225ENST00000566824 GKN3PP0CG01 181 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 PRG2P13727 222 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 PRKCAP17252 672 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 CHMP24386 653 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 RYKP34925 604 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 CRYBA2P53672 197 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 SUMO3P55854 103 aaPredicted RBP17.66■□□□□ 0.42
CLN3-225ENST00000566824 CLDN18P56856 261 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 PCBP3P57721 371 aaKnown RBP17.66■□□□□ 0.42
CLN3-225ENST00000566824 SRYQ05066 204 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 GNA13Q14344 377 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 QPRTQ15274 297 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.66■□□□□ 0.42
CLN3-225ENST00000566824 GLYR1Q49A26 553 aaPredicted RBP17.66■□□□□ 0.42
CLN3-225ENST00000566824 WLSQ5T9L3 541 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 GTPBP8Q8N3Z3 284 aaPredicted RBP17.66■□□□□ 0.42
CLN3-225ENST00000566824 METTL25Q8N6Q8 603 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 C11orf65Q8NCR3 313 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 HIPK4Q8NE63 616 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 TOR1AIP2Q8NFQ8 470 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 BCAS4Q8TDM0 211 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 DMRTA2Q96SC8 542 aa17.66■□□□□ 0.42
CLN3-225ENST00000566824 SLC5A6Q9Y289 635 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms