RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ARHGAP11BQ3KRB8 267 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 SPANXN4Q5MJ08 99 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 PDZK1Q5T2W1 519 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 GTF2IRD2BQ6EKJ0 949 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 C16orf62Q7Z3J2 963 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 SPATA19Q7Z5L4 167 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 GTF2IRD2Q86UP8 949 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 TMCO5AQ8N6Q1 288 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 GPR119Q8TDV5 335 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 ADGRG7Q96K78 797 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 WFIKKN1Q96NZ8 548 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 SERHL2Q9H4I8 314 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 NKIRAS1Q9NYS0 192 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 MKLN1Q9UL63 735 aa18.59■□□□□ 0.57
CLN3-219ENST00000565778 GPC6Q9Y625 555 aaPredicted RBP18.59■□□□□ 0.57
CLN3-219ENST00000565778 NUP214P35658 2090 aaPredicted RBP18.59■□□□□ 0.57
CLN3-219ENST00000565778 C16orf97H3BN30 126 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 ANKRD28O15084 1053 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 HDAC3O15379 428 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 ZNF264O43296 627 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 EIF4E2O60573 245 aaKnown RBP18.58■□□□□ 0.56
CLN3-219ENST00000565778 CYP7B1O75881 506 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 AGR2O95994 175 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 OR12D1P0DN82 309 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 ADH6P28332 368 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 PCYT1AP49585 367 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 SUMO3P55854 103 aaPredicted RBP18.58■□□□□ 0.56
CLN3-219ENST00000565778 UFM1P61960 85 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 CASP8Q14790 479 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 TOMM34Q15785 309 aaPredicted RBP18.58■□□□□ 0.56
CLN3-219ENST00000565778 EXOC3L2Q2M3D2 409 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 DPY19L1Q2PZI1 675 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 FAM174BQ3ZCQ3 159 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 ATAD3BQ5T9A4 648 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 ATG16L1Q676U5 607 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 OGFOD2Q6N063 350 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 ATP6V1C2Q8NEY4 427 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 TOR1AIP2Q8NFQ8 470 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 OR5W2Q8NH69 310 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 REXO5Q96IC2 774 aaKnown RBP18.58■□□□□ 0.56
CLN3-219ENST00000565778 GMPPAQ96IJ6 420 aaPredicted RBP18.58■□□□□ 0.56
CLN3-219ENST00000565778 KLHL15Q96M94 604 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 NMUR2Q9GZQ4 415 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 WDR55Q9H6Y2 383 aaPredicted RBP18.58■□□□□ 0.56
CLN3-219ENST00000565778 TIGARQ9NQ88 270 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 PLSCR4Q9NRQ2 329 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 KLHL28Q9NXS3 571 aa18.58■□□□□ 0.56
CLN3-219ENST00000565778 MARCOQ9UEW3 520 aaPredicted RBP18.58■□□□□ 0.56
CLN3-219ENST00000565778 ANKHD1Q8IWZ3 2542 aaKnown RBP18.57■□□□□ 0.56
CLN3-219ENST00000565778 GOLGA8QA0A0J9YX86 632 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 GOLGA8OA6NCC3 632 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 SERINC4A6NH21 518 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 TRPC5OSA6NMA1 111 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 E9PBE3 544 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 GOLGA8NF8WBI6 632 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 SDHDO14521 159 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 EFNA2O43921 213 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 HRGP04196 525 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 UBL4AP11441 157 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 EPHA3P29320 983 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 CHI3L1P36222 383 aaPredicted RBP18.57■□□□□ 0.56
CLN3-219ENST00000565778 UGT2B10P36537 528 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 CCR4P51679 360 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 GUSBP1Q15486 140 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 TMEM176BQ3YBM2 270 aaPredicted RBP18.57■□□□□ 0.56
CLN3-219ENST00000565778 TNFAIP8L2Q6P589 184 aaPredicted RBP18.57■□□□□ 0.56
CLN3-219ENST00000565778 OLIG3Q7RTU3 272 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 MIPOL1Q8TD10 442 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 RAB8BQ92930 207 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 TEX37Q96LM6 180 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 FOXC2Q99958 501 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 MED18Q9BUE0 208 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 KLHL4Q9C0H6 718 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 MANSC1Q9H8J5 431 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 TMBIM4Q9HC24 238 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 GLRX2Q9NS18 164 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 ZNF226Q9NYT6 803 aa18.57■□□□□ 0.56
CLN3-219ENST00000565778 GJE1A6NN92 205 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 SLCO1B7G3V0H7 640 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 ALDOCP09972 364 aaKnown RBP18.56■□□□□ 0.56
CLN3-219ENST00000565778 PRKCAP17252 672 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 ELK4P28324 431 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 SHC1P29353 583 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 SLC18A1P54219 525 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 CBFBQ13951 182 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 KEAP1Q14145 624 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 ZNF141Q15928 474 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 BEND6Q5SZJ8 279 aaPredicted RBP18.56■□□□□ 0.56
CLN3-219ENST00000565778 NXNQ6DKJ4 435 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 OR6K3Q8NGY3 331 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 ROBO4Q8WZ75 1007 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 SLC35A5Q9BS91 424 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 THUMPD3Q9BV44 507 aaKnown RBP18.56■□□□□ 0.56
CLN3-219ENST00000565778 PLEKHF2Q9H8W4 249 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 AIG1Q9NVV5 245 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 TESMINQ9Y4I5 508 aa18.56■□□□□ 0.56
CLN3-219ENST00000565778 SS18L1O75177 396 aaPredicted RBP18.55■□□□□ 0.56
CLN3-219ENST00000565778 SNNO75324 88 aaPredicted RBP18.55■□□□□ 0.56
CLN3-219ENST00000565778 UGT2B17O75795 530 aa18.55■□□□□ 0.56
CLN3-219ENST00000565778 CSTAP01040 98 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms