RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 Q8N9G6 341 aaPredicted RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 GALNT6Q8NCL4 622 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 RCBTB1Q8NDN9 531 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 TMEM52Q8NDY8 209 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 B3GNT7Q8NFL0 401 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 IFI44Q8TCB0 444 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 FAR1Q8WVX9 515 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 APH1BQ8WW43 257 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 LIPHQ8WWY8 451 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 PIK3R3Q92569 461 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 THRSPQ92748 146 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 UCN3Q969E3 161 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 C12orf43Q96C57 262 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 NMD3Q96D46 503 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 BPIFA2Q96DR5 249 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 LRR1Q96L50 414 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SECISBP2Q96T21 854 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 MNTQ99583 582 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 BARD1Q99728 777 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 CDC6Q99741 560 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 PRRX2Q99811 253 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CTRCQ99895 268 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 TBL1XR1Q9BZK7 514 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SEMA4CQ9C0C4 833 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 WWTR1Q9GZV5 400 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 LAT2Q9GZY6 243 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SPRTNQ9H040 489 aaPredicted RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 HMG20AQ9NP66 347 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 PNO1Q9NRX1 252 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 STARD5Q9NSY2 213 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 RLIMQ9NVW2 624 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SIDT1Q9NXL6 827 aaKnown RBP6.94□□□□□ -1.3
VPS39-204ENST00000561818 RHCGQ9UBD6 479 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 MKL2Q9ULH7 1088 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 ZNF337Q9Y3M9 751 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 SLCO1B1Q9Y6L6 691 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 THADAQ6YHU6 1953 aa6.94□□□□□ -1.3
VPS39-204ENST00000561818 CCDC88CQ9P219 2028 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 COL5A1P20908 1838 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 TNRC6BQ9UPQ9 1833 aaKnown RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 A0A087WUJ7 227 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 IGHV5-10-1A0A0J9YXX1 117 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ELOA3DA6NLF2 546 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 VSTM2BA6NLU5 285 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 HSPB2A8KAH6 182 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 KDM4EB2RXH2 506 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 FAM47E-STBD1D6RA91 191 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 H3BSA7 217 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 NTN3O00634 580 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 OR2T1O43869 369 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 XPNPEP2O43895 674 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 SLC25A12O75746 678 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 NDUFB2O95178 105 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 LDOC1O95751 146 aaPredicted RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 EPPINO95925 133 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 C1QCP02747 245 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 MT-ND2P03891 347 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 SCG5P05408 212 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ZGLP1P0C6A0 271 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 DBTP11182 482 aaKnown RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 PEPDP12955 493 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ICAM2P13598 275 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 HK1P19367 917 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 CFL1P23528 166 aaKnown RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 ACVR2AP27037 513 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 NOS3P29474 1203 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 SSTR4P31391 388 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 RANBP1P43487 201 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 CDH11P55287 796 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 MAT1AQ00266 395 aaKnown RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 BNC1Q01954 994 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 HSF2Q03933 536 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ZNF91Q05481 1191 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ACSM1Q08AH1 577 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 NFATC3Q12968 1075 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 SNTA1Q13424 505 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 GPR50Q13585 617 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 KRR1Q13601 381 aaKnown RBP6.93□□□□□ -1.3
VPS39-204ENST00000561818 IL10RAQ13651 578 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 IRF3Q14653 427 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 SPHARQ15513 63 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 HSPB2Q16082 182 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ELOA3BQ3SY89 546 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 SLC35D3Q5M8T2 416 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 NKAIN2Q5VXU1 208 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 LAIR1Q6GTX8 287 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 GUSBP11Q6P575 273 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 TUBA3EQ6PEY2 450 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 DPY19L2P2Q6ZN68 376 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 HDDC2Q7Z4H3 204 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ADCK1Q86TW2 530 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 OAFQ86UD1 273 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 LACC1Q8IV20 430 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 NRMQ8IXM6 262 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 CLIP4Q8N3C7 705 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ZNF614Q8N883 585 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 POMGNT2Q8NAT1 580 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 POGLUT1Q8NBL1 392 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 ELOA3Q8NG57 546 aa6.93□□□□□ -1.3
VPS39-204ENST00000561818 OR4D11Q8NGI4 311 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms