RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 POGLUT1Q8NBL1 392 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 OR5M3Q8NGP4 307 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 PHOSPHO1Q8TCT1 267 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 ADAMTS16Q8TE57 1224 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 HGDQ93099 445 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 NXPE2Q96DL1 559 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 ZNF597Q96LX8 424 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 ALPK1Q96QP1 1244 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 RBM4BQ9BQ04 359 aaKnown RBP10.29□□□□□ -0.76
USP3-218ENST00000560202 RBM4Q9BWF3 364 aaKnown RBP10.29□□□□□ -0.76
USP3-218ENST00000560202 OSBPL10Q9BXB5 764 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 TBL1XR1Q9BZK7 514 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 GABARAPL1Q9H0R8 117 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 CDCP1Q9H5V8 836 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 SMURF2Q9HAU4 748 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 WDR70Q9NW82 654 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 TESQ9UGI8 421 aaKnown RBP10.29□□□□□ -0.76
USP3-218ENST00000560202 KLK13Q9UKR3 277 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 NTNG1Q9Y2I2 539 aa10.29□□□□□ -0.76
USP3-218ENST00000560202 YARS2Q9Y2Z4 477 aaKnown RBP10.29□□□□□ -0.76
USP3-218ENST00000560202 TRBV4-1A0A0J9YWV2 114 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 A0A1W2PRQ8 180 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 GTPBP1O00178 669 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 MAN1A2O60476 641 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ADAM11O75078 769 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 CYP7B1O75881 506 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 OR5F1O95221 314 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 HPRP00739 348 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ALPLP05186 524 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 FBXO45P0C2W1 286 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 UBL4AP11441 157 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ZNF12P17014 697 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 HTR2AP28223 471 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 EVI2BP34910 448 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ACAA2P42765 397 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 MLF1P58340 268 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 PPP2R2BQ00005 443 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ST3GAL3Q11203 375 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 DGCR6Q14129 220 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 OR1Q1Q15612 314 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 MICAQ29983 383 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 FGD3Q5JSP0 725 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 DCST1Q5T197 706 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ANKRD34AQ69YU3 496 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 MARCH3Q86UD3 253 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 VASH2Q86V25 355 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ZNF440Q8IYI8 595 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 SLC5A8Q8N695 610 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 FAM71CQ8NEG0 241 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 GIPC3Q8TF64 312 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 TTC9Q92623 222 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 TMCO6Q96DC7 493 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 NODALQ96S42 347 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ZNF559Q9BR84 538 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 RTN4RQ9BZR6 473 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 POLR2J2Q9GZM3 115 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 POLR2J3Q9H1A7 115 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 PALMDQ9NP74 551 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 MAN2C1Q9NTJ4 1040 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 TUBA8Q9NY65 449 aaPredicted RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 USE1Q9NZ43 259 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 RSL24D1Q9UHA3 163 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 TMCC3Q9ULS5 477 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ZNF264O43296 627 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 OIP5O43482 229 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 NDUFB5O43674 189 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 CCNB2O95067 398 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ANGPTL1O95841 491 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 THY1P04216 161 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ENDOUP21128 410 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 ELAVL4P26378 380 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 SOX3P41225 446 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 CLK3P49761 638 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 SKP2Q13309 424 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 NTRK2Q16620 822 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 ZNF791Q3KP31 576 aaPredicted RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 DCAF10Q5QP82 559 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 H3F3CQ6NXT2 135 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 OPN5Q6U736 354 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 NCCRP1Q6ZVX7 275 aaPredicted RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 OR10G2Q8NGC3 310 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 SLC7A13Q8TCU3 470 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 GRHL3Q8TE85 626 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 SPACA9Q96E40 222 aaPredicted RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 ARSGQ96EG1 525 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 SLC41A3Q96GZ6 507 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 FUZQ9BT04 418 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 TRIM2Q9C040 744 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 TMEM27Q9HBJ8 222 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 EXOSC3Q9NQT5 275 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 RYDENQ9NUL5 291 aaKnown RBP10.28□□□□□ -0.76
USP3-218ENST00000560202 UBAP1Q9NZ09 502 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 CARD8Q9Y2G2 431 aa10.28□□□□□ -0.76
USP3-218ENST00000560202 PCSK5Q92824 1860 aa10.27□□□□□ -0.76
USP3-218ENST00000560202 TRAPPC13A5PLN9 417 aa10.27□□□□□ -0.77
USP3-218ENST00000560202 CCDC160A6NGH7 325 aa10.27□□□□□ -0.77
USP3-218ENST00000560202 FAAHO00519 579 aa10.27□□□□□ -0.77
USP3-218ENST00000560202 DLGAP1O14490 977 aa10.27□□□□□ -0.77
USP3-218ENST00000560202 SCO2O43819 266 aa10.27□□□□□ -0.77
USP3-218ENST00000560202 OR6B1O95007 311 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms