RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 RFPL3SP0C7P2 107 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 HSD17B1P14061 328 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 ABOP16442 354 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 HK1P19367 917 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 PGM1P36871 562 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 RNF144AP50876 292 aaPredicted RBP9.16□□□□□ -0.94
USP3-216ENST00000559873 TDGF1P3P51864 188 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 CASP6P55212 293 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 EEF1A1P68104 462 aaKnown RBP9.16□□□□□ -0.94
USP3-216ENST00000559873 BNIP2Q12982 314 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 LRRC23Q53EV4 343 aaPredicted RBP9.16□□□□□ -0.94
USP3-216ENST00000559873 RNFT1Q5M7Z0 435 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 DHRS4L2Q6PKH6 230 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 ENPP6Q6UWR7 440 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 CCDC80Q76M96 950 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 TRILQ7L0X0 811 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 HMGN2P46Q86SG4 172 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 ZNF605Q86T29 641 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 VRK2Q86Y07 508 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 GRAMD2AQ8IUY3 354 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 EID3Q8N140 333 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 FAM83FQ8NEG4 500 aaPredicted RBP9.16□□□□□ -0.94
USP3-216ENST00000559873 OR5W2Q8NH69 310 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 ZNF563Q8TA94 476 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 ST8SIA1Q92185 356 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 PROX1Q92786 737 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 FAM162AQ96A26 154 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 MIB2Q96AX9 1013 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 ARSGQ96EG1 525 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 CDRT15Q96T59 188 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 DEFB127Q9H1M4 99 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 PLSCR2Q9NRY7 297 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 DNAJB12Q9NXW2 375 aaKnown RBP9.16□□□□□ -0.94
USP3-216ENST00000559873 VDAC3Q9Y277 283 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 NINQ8N4C6 2090 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 KALRNO60229 2985 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 A0A1B0GVC2 190 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 C7orf72A4D263 438 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 M0QX08 132 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 FAAHO00519 579 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 CXCR6O00574 342 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 ADAM10O14672 748 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 BCKDKO14874 412 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 GMFGO60234 142 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 ACTL6AO96019 429 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 C8BP07358 591 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 CELA3AP09093 270 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 LINGO3P0C6S8 592 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 ME2P23368 584 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 MST1P26927 711 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 ELK4P28324 431 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 ADH6P28332 368 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 HTR1EP28566 365 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 HTR3AP46098 478 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 RGS8P57771 180 aaPredicted RBP9.15□□□□□ -0.94
USP3-216ENST00000559873 SF3B4Q15427 424 aaKnown RBP eCLIP9.15□□□□□ -0.942e-6■■■■□ 21.4
USP3-216ENST00000559873 CBLN3Q6UW01 205 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 CCDC121Q6ZUS5 278 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 RANBP3LQ86VV4 465 aaPredicted RBP9.15□□□□□ -0.94
USP3-216ENST00000559873 NEIL3Q8TAT5 605 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 FIG4Q92562 907 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 ZG16BQ96DA0 208 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 MRGPRX4Q96LA9 322 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 RTN4RQ9BZR6 473 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 SLC6A15Q9H2J7 730 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 MUC13Q9H3R2 512 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 MED17Q9NVC6 651 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 ADPRHL2Q9NX46 363 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 TESQ9UGI8 421 aaKnown RBP9.15□□□□□ -0.94
USP3-216ENST00000559873 RPS6KA6Q9UK32 745 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 RALYQ9UKM9 306 aaKnown RBP9.15□□□□□ -0.94
USP3-216ENST00000559873 SLC9A8Q9Y2E8 581 aa9.15□□□□□ -0.94
USP3-216ENST00000559873 SPIN1Q9Y657 262 aaPredicted RBP9.15□□□□□ -0.94
USP3-216ENST00000559873 A0A1B0GTH9 108 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 FIGNL2A6NMB9 653 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 GJE1A6NN92 205 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 C17orf51A8MQB3 221 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 PRRG2O14669 202 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 MFN2O95140 757 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 OPN1SWP03999 348 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 T-ENOLP0DO92 83 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 GP1BBP13224 206 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 GGT1P19440 569 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 POU3F2P20265 443 aaPredicted RBP9.14□□□□□ -0.95
USP3-216ENST00000559873 CHMP24386 653 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 KDELR2P33947 212 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 RYKP34925 604 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 PTGS2P35354 604 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 CPOXP36551 454 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 FOXK1P85037 733 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 EPS8Q12929 822 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 BNIP1Q12981 228 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 SELENBP1Q13228 472 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 QPRTQ15274 297 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 PLPPR5Q32ZL2 321 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 NDUFAF6Q330K2 333 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 MTX3Q5HYI7 312 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 NHSL2Q5HYW2 709 aa9.14□□□□□ -0.95
USP3-216ENST00000559873 WIPI1Q5MNZ9 446 aaPredicted RBP9.14□□□□□ -0.95
USP3-216ENST00000559873 WLSQ5T9L3 541 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms