RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 POLR2EP19388 210 aaKnown RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 MUTP22033 750 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 HOXD10P28358 340 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 HNRNPH3P31942 346 aaKnown RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 VHLP40337 213 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 TKTL1P51854 596 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 VCPP55072 806 aaKnown RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 HPCAP84074 193 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 PLOD1Q02809 727 aaPredicted RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 ARHGAP1Q07960 439 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 EIF4EBP1Q13541 118 aaPredicted RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 NDUFA5Q16718 116 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 CFAP221Q4G0U5 840 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 LIN52Q52LA3 116 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 CCDC122Q5T0U0 273 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 KCTD16Q68DU8 428 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 GALNT17Q6IS24 598 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 TMEM53Q6P2H8 277 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 PODNL1Q6PEZ8 512 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 IL34Q6ZMJ4 242 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 FAM47EQ6ZV65 393 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 UNC45BQ8IWX7 931 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 AQP12AQ8IXF9 295 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 NELFCDQ8IXH7 590 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 ARIH2OSQ8N7S6 290 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 UXS1Q8NBZ7 420 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 GGHQ92820 318 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 ATP6V0A1Q93050 837 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 EFHD2Q96C19 240 aaPredicted RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 HAUS1Q96CS2 278 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 DGCR14Q96DF8 476 aaKnown RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 GUCD1Q96NT3 240 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 THUMPD3Q9BV44 507 aaKnown RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 TSSK1BQ9BXA7 367 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 PTGES2Q9H7Z7 377 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 INIPQ9NRY2 104 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 HOXC10Q9NYD6 342 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 AIPL1Q9NZN9 384 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 MRTO4Q9UKD2 239 aaKnown RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 GUCA1BQ9UMX6 200 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 ARL2BPQ9Y2Y0 163 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 ATP6V0A2Q9Y487 856 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 NCAPD2Q15021 1401 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 FRMPD1Q5SYB0 1578 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 CEP170BQ9Y4F5 1589 aaPredicted RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 ANKRD26Q9UPS8 1709 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 CARMIL3Q8ND23 1372 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 AGLP35573 1532 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 HIVEP2P31629 2446 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 PREX2Q70Z35 1606 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 BCL9LQ86UU0 1499 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 NEO1Q92859 1461 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 WDR19Q8NEZ3 1342 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 CHD1O14646 1710 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 LTBP1Q14766 1721 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 ITSN1Q15811 1721 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 ADAMTS12P58397 1594 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 UGGT1Q9NYU2 1555 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 TRAV34A0A0B4J273 112 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 YJEFN3A6XGL0 299 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 E9PBE3 544 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 CETN3O15182 167 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 NVLO15381 856 aaKnown RBP2.46□□□□□ -2.02
VPS13C-208ENST00000559119 SERPINB7O75635 380 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 GNA14O95837 355 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 AGTP01019 485 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 KRT16P08779 473 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 NUDT17P0C025 328 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 CT45A8P0DMV1 189 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 CT45A9P0DMV2 189 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 GLULP15104 373 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 IFNAR1P17181 557 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 SAA4P35542 130 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 MTTPP55157 894 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 KCNJ2P63252 427 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 TNNC1P63316 161 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 XIAPP98170 497 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 BCL2L1Q07817 233 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 C2orf54Q08AI8 447 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 AP1B1Q10567 949 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 PNOCQ13519 176 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 ZIC1Q15915 447 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 KRTAP21-2Q3LI59 83 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 PARP10Q53GL7 1025 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 HSP90AA5PQ58FG0 334 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 CT45A2Q5DJT8 189 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 TNFAIP8L3Q5GJ75 292 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 IL23RQ5VWK5 629 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 C8orf74Q6P047 294 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 DHRS4L2Q6PKH6 230 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 MSANTD1Q6ZTZ1 278 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 GET4Q7L5D6 327 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-208ENST00000559119 LRRC34Q8IZ02 419 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 NUP93Q8N1F7 819 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 BBS5Q8N3I7 341 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 ALLCQ8N6M5 410 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 Q8NFD4 153 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 GDAP1Q8TB36 358 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 FNDC8Q8TC99 324 aa2.46□□□□□ -2.02
VPS13C-208ENST00000559119 MARCH1Q8TCQ1 289 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms