RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 PPIEQ9UNP9 301 aaKnown RBP3.88□□□□□ -1.79
SPG11-211ENST00000558561 MMACHCQ9Y4U1 282 aa3.88□□□□□ -1.79
SPG11-211ENST00000558561 POLR3HQ9Y535 204 aaPredicted RBP3.88□□□□□ -1.79
SPG11-211ENST00000558561 LIPGQ9Y5X9 500 aa3.88□□□□□ -1.79
SPG11-211ENST00000558561 EXPH5Q8NEV8 1989 aa3.88□□□□□ -1.79
SPG11-211ENST00000558561 PRR14LQ5THK1 2151 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 DYTNA2CJ06 578 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 ANKUB1A6NFN9 424 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 FAM166BA8MTA8 275 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 C9JVG2 144 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 ADAM10O14672 748 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 LRRTM2O43300 516 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 HS6ST1O60243 411 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 UGDHO60701 494 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 CDH16O75309 829 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 GLRA3O75311 464 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 ZFAND5O76080 213 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 OTCP00480 354 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 BPGMP07738 259 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 GSTA1P08263 222 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 ICAM2P13598 275 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 CPMP14384 443 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 NT5EP21589 574 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 BGNP21810 368 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 JAK1P23458 1154 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 MPGP29372 298 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 HMOX2P30519 316 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 PTGDSP41222 190 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 EMDP50402 254 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 HLCSP50747 726 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 SLC37A1P57057 533 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 FBXW4P57775 412 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 DNAJB13P59910 316 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 IFT88Q13099 833 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 GAB1Q13480 694 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 SEC23BQ15437 767 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 EXT1Q16394 746 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 C3AR1Q16581 482 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 PRICKLE4Q2TBC4 344 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 KRT71Q3SY84 523 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 GGTA1PQ4G0N0 100 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 PIGGQ5H8A4 983 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 CEP78Q5JTW2 689 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 FHL5Q5TD97 284 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 PRAMEF20Q5VT98 475 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 FAM71E1Q6IPT2 247 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 LIN54Q6MZP7 749 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 RPUSD3Q6P087 351 aaKnown RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 SLC48A1Q6P1K1 146 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 CYP20A1Q6UW02 462 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 GALNT10Q86SR1 603 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 FJX1Q86VR8 437 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 SIAH3Q8IW03 269 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 MREGQ8N565 214 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 KRTCAP2Q8N6L1 136 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 ZNF441Q8N8Z8 693 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 CCDC63Q8NA47 563 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 OR7G2Q8NG99 324 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 OR4K14Q8NGD5 310 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 C16orf52Q8NHV5 167 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 CDC26Q8NHZ8 85 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 TANKQ92844 425 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 RIT1Q92963 219 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 UBE2E3Q969T4 207 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 CIDECQ96AQ7 238 aaPredicted RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 EXOSC8Q96B26 276 aaKnown RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 ZNF524Q96C55 264 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 OTUB1Q96FW1 271 aaPredicted RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 VMP1Q96GC9 406 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 C16orf58Q96GQ5 468 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 RBM18Q96H35 190 aaKnown RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 APOPT1Q96IL0 206 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 MAGED4Q96JG8 741 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 C5orf34Q96MH7 638 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 DOCK7Q96N67 2140 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 DGAT2Q96PD7 388 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 NODALQ96S42 347 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 ZNF382Q96SR6 550 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 SORT1Q99523 831 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 NPAS1Q99742 590 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 SLX1AQ9BQ83 275 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 UTP23Q9BRU9 249 aaKnown RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 TMEM109Q9BVC6 243 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 ROPN1BQ9BZX4 212 aaPredicted RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 NXF5Q9H1B4 397 aaKnown RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 ELOVL6Q9H5J4 265 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 ROPN1Q9HAT0 212 aaPredicted RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 CLK4Q9HAZ1 481 aaKnown RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 ADAP2Q9NPF8 381 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 TUBA8Q9NY65 449 aaPredicted RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 MAT2BQ9NZL9 334 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 VPS29Q9UBQ0 182 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 GRHPRQ9UBQ7 328 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 C19orf25Q9UFG5 118 aaPredicted RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 ZNF639Q9UID6 485 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 DNAJC15Q9Y5T4 150 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 KCNE3Q9Y6H6 103 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 CLCA3PQ9Y6N3 262 aa3.87□□□□□ -1.79
SPG11-211ENST00000558561 USP9YO00507 2555 aaPredicted RBP3.87□□□□□ -1.79
SPG11-211ENST00000558561 HEATR5AQ86XA9 2040 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms