RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 ELK4P28324 431 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 PRKAA2P54646 552 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 CASP9P55211 416 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 CDH11P55287 796 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 IRX1P78414 480 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-223ENST00000556689 HSPB3Q12988 150 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 RAB35Q15286 201 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 ELOA3BQ3SY89 546 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 TMEM176BQ3YBM2 270 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-223ENST00000556689 FAM153CQ494X1 144 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 NOXRED1Q6NXP6 359 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 IKBIPQ70UQ0 350 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 HDXQ7Z353 690 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 ZAR1Q86SH2 424 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 SLC22A9Q8IVM8 553 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 NUP43Q8NFH3 380 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 ELOA3Q8NG57 546 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 DCAKDQ8WVC6 231 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 KCNA7Q96RP8 456 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 C19orf24Q9BVV8 132 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 CACNG6Q9BXT2 260 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 SHARPINQ9H0F6 387 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 TMEM216Q9P0N5 145 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 KLHL9Q9P2J3 617 aa11.21□□□□□ -0.61
SHMT2-223ENST00000556689 POLR3HQ9Y535 204 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-223ENST00000556689 NBEAL1Q6ZS30 2694 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 ABCD4O14678 606 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 RIPK2O43353 540 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 H2AFXP16104 143 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-223ENST00000556689 SLC25A16P16260 332 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 ENPP1P22413 925 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 TTKP33981 857 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 OR3A2P47893 321 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 SERPINB4P48594 390 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 PRIM2P49643 509 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 FOXF1Q12946 379 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 TIMM23BQ5SRD1 257 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 Q6ZSR9 355 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 TRIM46Q7Z4K8 759 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 P2RY8Q86VZ1 359 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 SLC16A11Q8NCK7 471 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 ATP6V1C2Q8NEY4 427 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 OR2W6PQ8NHA6 318 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 FBXO27Q8NI29 283 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 PHOSPHO1Q8TCT1 267 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 EGLN2Q96KS0 407 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 BCO1Q9HAY6 547 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 MID1IP1Q9NPA3 183 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 CBLN4Q9NTU7 201 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 NTMQ9P121 344 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 PRSS50Q9UI38 385 aa11.2□□□□□ -0.62
SHMT2-223ENST00000556689 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 C9JVG2 144 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 E7EQL1 145 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 PDPK1O15530 556 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 RGS14O43566 566 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 LMX1BO60663 402 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 HSPA4LO95757 839 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 NUDT14O95848 222 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 ALOX5P09917 674 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 MYZAPP0CAP1 466 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 ACP2P11117 423 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 GGT1P19440 569 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 FOXA1P55317 472 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 RAC3P60763 192 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 CD226Q15762 336 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 DUSP5Q16690 384 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 C11orf71Q6IPW1 123 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 ZCCHC12Q6PEW1 402 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 TIFABQ6ZNK6 161 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 SZRD1Q7Z422 152 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 MTERF4Q7Z6M4 381 aaKnown RBP11.19□□□□□ -0.62
SHMT2-223ENST00000556689 LCA5Q86VQ0 697 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 FBXL14Q8N1E6 418 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 PIAS4Q8N2W9 510 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-223ENST00000556689 ZFP28Q8NHY6 868 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 FAM168AQ92567 244 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 PROX1Q92786 737 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 CIDECQ96AQ7 238 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-223ENST00000556689 ZNF775Q96BV0 537 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-223ENST00000556689 L3HYPDHQ96EM0 354 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 GIMAP5Q96F15 307 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 DHRS9Q9BPW9 319 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 CXorf36Q9H7Y0 433 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 POU2F3Q9UKI9 436 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 MGAT4BQ9UQ53 548 aa11.19□□□□□ -0.62
SHMT2-223ENST00000556689 GPC6Q9Y625 555 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-223ENST00000556689 IGHV3-15A0A0B4J1V0 119 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 GOLGA8QA0A0J9YX86 632 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 GOLGA8OA6NCC3 632 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 OR5H1A6NKK0 313 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 GOLGA8NF8WBI6 632 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 GOLGA8RI6L899 631 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 UBFD1O14562 309 aaKnown RBP11.18□□□□□ -0.62
SHMT2-223ENST00000556689 SEC22BO75396 215 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 RSL1D1O76021 490 aaKnown RBP11.18□□□□□ -0.62
SHMT2-223ENST00000556689 PGM3O95394 542 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 SRD5A1P18405 259 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 IGHV1-2P23083 117 aa11.18□□□□□ -0.62
SHMT2-223ENST00000556689 SLC7A1P30825 629 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms