RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SGCGQ13326 291 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 SNTA1Q13424 505 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 SNX1Q13596 522 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 ITGA9Q13797 1035 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 GK2Q14410 553 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 SF3B4Q15427 424 aaKnown RBP eCLIP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 CHRNA6Q15825 494 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 IL17AQ16552 155 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 GPAT3Q53EU6 434 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 DDI2Q5TDH0 399 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 LYPLAL1Q5VWZ2 237 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 HIST2H2AA3Q6FI13 130 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 NCCRP1Q6ZVX7 275 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 SLC47A2Q86VL8 602 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 CENPLQ8N0S6 344 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 LRRC17Q8N6Y2 441 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 RNF148Q8N7C7 305 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 TMEM99Q8N816 258 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 CHDHQ8NE62 594 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 TRPV3Q8NET8 790 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 OR2T12Q8NG77 320 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 OR13C5Q8NGS8 318 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 OR52N5Q8NH56 324 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 SLC2A14Q8TDB8 520 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 GRHL3Q8TE85 626 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 UBTD2Q8WUN7 234 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 ASB5Q8WWX0 329 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 PATE1Q8WXA2 126 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 ZNF606Q8WXB4 792 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 PINX1Q96BK5 328 aaKnown RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 ALG14Q96F25 216 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 RBM41Q96IZ5 413 aaKnown RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 C18orf12Q96KH6 178 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 CXorf58Q96LI9 332 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 ZNF48Q96MX3 618 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 TTC25Q96NG3 672 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 NDNQ99608 321 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 RHNO1Q9BSD3 238 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 CRACR2AQ9BSW2 395 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 FICDQ9BVA6 458 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 NMNAT2Q9BZQ4 307 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 SIRPDQ9H106 197 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 SMYD3Q9H7B4 428 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 ACTR8Q9H981 624 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 C3orf14Q9HBI5 128 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 DMAP1Q9NPF5 467 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 YAE1D1Q9NRH1 226 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 FAM212BQ9NTI7 297 aaPredicted RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 FAM49BQ9NUQ9 324 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 DCAF16Q9NXF7 216 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 BCAP29Q9UHQ4 241 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 ATP6V1HQ9UI12 483 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 MRTO4Q9UKD2 239 aaKnown RBP3.35□□□□□ -1.87
LIMA1-208ENST00000551691 MAN1B1Q9UKM7 699 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 ETV7Q9Y603 341 aa3.35□□□□□ -1.87
LIMA1-208ENST00000551691 IGLV5-45A0A087WSX0 123 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 SAA2-SAA4A0A096LPE2 208 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 TRGV8A0A0C4DH27 118 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 A0A1B0GUH1 482 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 A0A1W2PPI3 338 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 ANKRD30BLA7E2S9 258 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 A8MVM7 634 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 K7ERQ8 282 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 TULP2O00295 520 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 FPGTO14772 594 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 SYT7O43581 403 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 NME2P1O60361 137 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 MTX2O75431 263 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 VPS26AO75436 327 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 PALMO75781 387 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 CEACAM4O75871 244 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 MFN2O95140 757 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 OPN1MWP04001 364 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 OPN1MW2P0DN77 364 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 OPN1MW3P0DN78 364 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 FCGR1AP12314 374 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 PAICSP22234 425 aaKnown RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 SRD5A2P31213 254 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 GBX2P52951 348 aaPredicted RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 KRTAP10-7P60409 375 aaPredicted RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 HERV-K104P61576 105 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 TUBA1BP68363 451 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 KEAP1Q14145 624 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 ELAVL3Q14576 367 aaKnown RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 KIR2DS3Q14952 304 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 CFAP157Q5JU67 520 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 NADSYN1Q6IA69 706 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 RTL6Q6ICC9 239 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 C11orf87Q6NUJ2 197 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 SLC27A4Q6P1M0 643 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 UNQ6126/PRO20091Q6UXV3 157 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 BNIPLQ7Z465 357 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 VPS36Q86VN1 386 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 AMZ2Q86W34 360 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 PLD3Q8IV08 490 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 RCOR2Q8IZ40 523 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 SAMD14Q8IZD0 417 aaPredicted RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 METTL27Q8N6F8 245 aaPredicted RBP3.34□□□□□ -1.87
LIMA1-208ENST00000551691 C4orf32Q8N8J7 132 aa3.34□□□□□ -1.87
LIMA1-208ENST00000551691 NIPA2Q8N8Q9 360 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms