RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NRSN1Q8IZ57 195 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 SVBPQ8N300 66 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 LHFPL5Q8TAF8 219 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 THEM6Q8WUY1 208 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 TAF1LQ8IZX4 1826 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 UNC119BA6NIH7 251 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 PIPP12273 146 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-215ENST00000544547 AGTR1P30556 359 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 CCR8P51685 355 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 FLI1Q01543 452 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-215ENST00000544547 ZNF740Q8NDX6 193 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 PXT1Q8NFP0 134 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 LGALS14Q8TCE9 139 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 TFGQ92734 400 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-215ENST00000544547 GAL3ST3Q96A11 431 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 MARVELD1Q9BSK0 173 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 ZNF334Q9HCZ1 680 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-215ENST00000544547 GMEB2Q9UKD1 530 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 FADS1O60427 444 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 MAP3K8P41279 467 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 KCNC3Q14003 757 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 OCLNQ16625 522 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 OR5M10Q6IEU7 315 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 SCARB1Q8WTV0 552 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 GAS2L1Q99501 681 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-215ENST00000544547 NKX6-2Q9C056 277 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-215ENST00000544547 ATG5Q9H1Y0 275 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 SLC52A3Q9NQ40 469 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 ZC3H12DA2A288 527 aaKnown RBP13.33□□□□□ -0.27
LIMS1-215ENST00000544547 B3GALT2O43825 422 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 ADRB1P08588 477 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 MPC1LP0DKB6 136 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 GDI1P31150 447 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 GPR85P60893 370 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 GPM6BQ13491 265 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 MORN1Q5T089 497 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 OR52E2Q8NGJ4 325 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 SYNPRQ8TBG9 265 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 BRIX1Q8TDN6 353 aaKnown RBP13.33□□□□□ -0.27
LIMS1-215ENST00000544547 RADILQ96JH8 1075 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 WDFY2Q96P53 400 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 MVB12BQ9H7P6 319 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 CXorf36Q9H7Y0 433 aa13.33□□□□□ -0.27
LIMS1-215ENST00000544547 ZMAT5Q9UDW3 170 aaKnown RBP13.33□□□□□ -0.27
LIMS1-215ENST00000544547 PLEKHB1Q9UF11 243 aaPredicted RBP13.33□□□□□ -0.27
LIMS1-215ENST00000544547 SHOXO15266 292 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 UBL3O95164 117 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 TGM6O95932 706 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 KLKB1P03952 638 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 AMY2AP04746 511 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 GLAP06280 429 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 DBIP07108 87 aaKnown RBP13.33□□□□□ -0.28
LIMS1-215ENST00000544547 AK4P27144 223 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-215ENST00000544547 GRK6P43250 576 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 DNASE1L1P49184 302 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 TRAM1Q15629 374 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 FAM69AQ5T7M9 428 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 TMUB2Q71RG4 321 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 RAB11FIP2Q7L804 512 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF227Q86WZ6 799 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 OR6T1Q8NGN1 323 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 GHSRQ92847 366 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 SLC6A7Q99884 636 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 DNTTIP1Q9H147 329 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 POLMQ9NP87 494 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-215ENST00000544547 ZDHHC4Q9NPG8 344 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 RPS10P5Q9NQ39 176 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 MRPS17Q9Y2R5 130 aaKnown RBP13.33□□□□□ -0.28
LIMS1-215ENST00000544547 LDOC1O95751 146 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-215ENST00000544547 CBX7O95931 251 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 CTRB1P17538 263 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 DDX6P26196 483 aaKnown RBP eCLIP13.33□□□□□ -0.288e-6■□□□□ 9.7
LIMS1-215ENST00000544547 DLSTP36957 453 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 VASNQ6EMK4 673 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 CTRB2Q6GPI1 263 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 QSOX2Q6ZRP7 698 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 SUN3Q8TAQ9 357 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 MYLIPQ8WY64 445 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 CNTNAP3BQ96NU0 1288 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 LMF1Q96S06 567 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 HRH4Q9H3N8 390 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 TRIM64BA6NI03 449 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 ACOD1A6NK06 481 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 BLOC1S5-TXNDC5H3BN57 136 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 PEX11BO96011 259 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 BLKP51451 505 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 LMAN2Q12907 356 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 UBXN2BQ14CS0 331 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 TUSC1Q2TAM9 212 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 MMP21Q8N119 569 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 LINC01599Q8WXQ3 324 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 ATF6BQ99941 703 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 TAPBPLQ9BX59 468 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 SYT4Q9H2B2 425 aa13.33□□□□□ -0.28
LIMS1-215ENST00000544547 NDUFS4O43181 175 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 SYN1P17600 705 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 RAD52P43351 418 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 LUMP51884 338 aaPredicted RBP13.32□□□□□ -0.28
LIMS1-215ENST00000544547 TNK1Q13470 666 aa13.32□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF385BQ569K4 471 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms