RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	ACSM1	Q08AH1	577 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	ILF3	Q12906	894 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	RUNX2	Q13950	521 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	LAMTOR1	Q6IAA8	161 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	FIGLA	Q6QHK4	219 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	ZNF620	Q6ZNG0	422 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	GDF7	Q7Z4P5	450 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC22A18AS	Q8N1D0	253 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	OR5T3	Q8NGG3	340 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	OR52N1	Q8NH53	320 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	RLN3	Q8WXF3	142 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	ARSG	Q96EG1	525 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	SAMD8	Q96LT4	415 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	ZNF681	Q96N22	645 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	OR2A5	Q96R48	311 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	MCHR1	Q99705	422 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	TEX12	Q9BXU0	123 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	MED20	Q9H944	212 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	TRPV5	Q9NQA5	729 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	ACTR10	Q9NZ32	417 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	SCML1	Q9UN30	329 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	HSPB11	Q9Y547	144 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	GTPBP1	O00178	669 aa	Known RBP	11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	EMC8	O43402	210 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	RNF13	O43567	381 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC19A2	O60779	497 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	SEMA4F	O95754	770 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	PAH	P00439	452 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	TYRP1	P17643	537 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	IGFBP4	P22692	258 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	NDUFS1	P28331	727 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	AKT2	P31751	481 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	IFNA8	P32881	189 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	LSS	P48449	732 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	DECR1	Q16698	335 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	CCNJ	Q5T5M9	372 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	FCRL6	Q6DN72	434 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	GJD3	Q8N144	294 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC44A3	Q8N4M1	653 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	DEFB119	Q8N690	84 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC37A3	Q8NCC5	494 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	OR2T33	Q8NG76	320 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	OR4M1	Q8NGD0	313 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	FLVCR1-AS1	Q8TAF5	88 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	GAL3ST3	Q96A11	431 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC41A3	Q96GZ6	507 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	ASB6	Q9NWX5	421 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	ADAM30	Q9UKF2	790 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	C12orf71	A8MTZ7	269 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	APBB3	O95704	486 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	TFPI	P10646	304 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	FUT1	P19526	365 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	GCGR	P47871	477 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	MAB21L1	Q13394	359 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	DEFB110	Q30KQ9	67 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	PLBD1	Q6P4A8	553 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	FAM160A2	Q8N612	972 aa	Predicted RBP	11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	ADAMTS15	Q8TE58	950 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	FAM3C	Q92520	227 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	AKAP1	Q92667	903 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	CDS1	Q92903	461 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	GAS2L1	Q99501	681 aa	Predicted RBP	11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	PPIL3	Q9H2H8	161 aa	Known RBP	11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	FBRS	Q9HAH7	460 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	EVA1B	Q9NVM1	165 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	C2orf42	Q9NWW7	574 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	HRASLS2	Q9NWW9	162 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	KLHL28	Q9NXS3	571 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC7A7	Q9UM01	511 aa		11.62	□□□□□ -0.55
RNF4-222	ENST00000541204		A6NCN8	305 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	KLF4	O43474	513 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	RGS9	O75916	674 aa	Predicted RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	GAA	P10253	952 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	CFL1	P23528	166 aa	Known RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	SRSF5	Q13243	272 aa	Known RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	GPR176	Q14439	515 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	TRMT12	Q53H54	448 aa	Known RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	FAM27D1	Q5T7N8	215 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	PRAMEF8	Q5VWM4	474 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	PRAMEF7	Q5VXH5	474 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	SMARCD3	Q6STE5	483 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	MBOAT2	Q6ZWT7	520 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	CXXC5	Q7LFL8	322 aa	Known RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC22A18	Q96BI1	424 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	SLC35A4	Q96G79	324 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	GTPBP2	Q9BX10	602 aa	Known RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	HCRTR1	O43613	425 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	EIF4E	P06730	217 aa	Known RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	TBXA2R	P21731	343 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	MRPS21	P82921	87 aa	Known RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	MRPL28	Q13084	256 aa	Known RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	TMEM44	Q2T9K0	475 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	TAF8	Q7Z7C8	310 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	LRRC25	Q8N386	305 aa	Predicted RBP	11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	SMRP1	Q8NCR6	262 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	NR4A3	Q92570	626 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	MOAP1	Q96BY2	351 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	ALG8	Q9BVK2	526 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	SARG	Q9BW04	601 aa		11.61	□□□□□ -0.55
RNF4-222	ENST00000541204	ANKRD19P	Q9H560	264 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 132.7 ms