RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CD180Q99467 661 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 ARHGAP9Q9BRR9 750 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 ATP13A2Q9NQ11 1180 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 MEPEQ9NQ76 525 aaPredicted RBP12.73□□□□□ -0.37
RTN3-210ENST00000540798 QPCTLQ9NXS2 382 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 UGT2A1Q9Y4X1 527 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 WWP2O00308 870 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 CLDN4O14493 209 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 PTP4A3O75365 173 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 SLC2A10O95528 541 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 CH25HO95992 272 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 CT45A8P0DMV1 189 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 CT45A9P0DMV2 189 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 RBM34P42696 430 aaKnown RBP12.72□□□□□ -0.37
RTN3-210ENST00000540798 RNF144AP50876 292 aaPredicted RBP12.72□□□□□ -0.37
RTN3-210ENST00000540798 CT45A2Q5DJT8 189 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 LIPKQ5VXJ0 399 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 SNX29P2Q8IUI4 249 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 NEURL2Q9BR09 285 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 ASPNQ9BXN1 380 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 C6orf62Q9GZU0 229 aaPredicted RBP12.72□□□□□ -0.37
RTN3-210ENST00000540798 HINT3Q9NQE9 182 aaKnown RBP12.72□□□□□ -0.37
RTN3-210ENST00000540798 WNT16Q9UBV4 365 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 SIGLEC7Q9Y286 467 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 ADAMTS20P59510 1910 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 HYAL3O43820 417 aaPredicted RBP12.72□□□□□ -0.37
RTN3-210ENST00000540798 IFI30P13284 250 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 RPS19P39019 145 aaKnown RBP12.72□□□□□ -0.37
RTN3-210ENST00000540798 BIKQ13323 160 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 ERV3-1Q14264 604 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 DEFB133Q30KQ1 61 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 ZC3H14Q6PJT7 736 aaKnown RBP12.72□□□□□ -0.37
RTN3-210ENST00000540798 CCDC190Q86UF4 302 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 CMIPQ8IY22 773 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 RCBTB1Q8NDN9 531 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 BBS1Q8NFJ9 593 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 BPIFA2Q96DR5 249 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 TGM7Q96PF1 710 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 CNPPD1Q9BV87 410 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 BARHL1Q9BZE3 327 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 ENKD1Q9H0I2 346 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 TMEM27Q9HBJ8 222 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 PDE7BQ9NP56 450 aa12.72□□□□□ -0.37
RTN3-210ENST00000540798 SAGE2PA6NJ88 616 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 RFPL3O75679 317 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 UPK1BO75841 260 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 FUT1P19526 365 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 SLC1A3P43003 542 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 RPL6Q02878 288 aaKnown RBP12.71□□□□□ -0.37
RTN3-210ENST00000540798 FHL1Q13642 323 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 PLK5Q496M5 336 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 OR2G6Q5TZ20 316 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 CD200R1LQ6Q8B3 271 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 CARFQ8N187 725 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 SCAIQ8N9R8 606 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 SPRTNQ9H040 489 aaPredicted RBP12.71□□□□□ -0.37
RTN3-210ENST00000540798 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.71□□□□□ -0.37
RTN3-210ENST00000540798 MED31Q9Y3C7 131 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 A0A1B0GWA3 101 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 MAOAP21397 527 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.71□□□□□ -0.37
RTN3-210ENST00000540798 ZNF181Q2M3W8 571 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 HSDL2Q6YN16 418 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 UTS2BQ765I0 119 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 C11orf74Q86VG3 221 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 GID4Q8IVV7 300 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 CAMKK1Q8N5S9 505 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 OR9Q1Q8NGQ5 310 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 OR51Q1Q8NH59 317 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 MMABQ96EY8 250 aaPredicted RBP12.71□□□□□ -0.37
RTN3-210ENST00000540798 SPACA7Q96KW9 195 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 NELL2Q99435 816 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 PELOQ9BRX2 385 aaKnown RBP12.71□□□□□ -0.37
RTN3-210ENST00000540798 G6PC3Q9BUM1 346 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 TRIM2Q9C040 744 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 LANCL2Q9NS86 450 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 SACM1LQ9NTJ5 587 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 UCKL1Q9NWZ5 548 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 TXNL4BQ9NX01 149 aaKnown RBP12.71□□□□□ -0.37
RTN3-210ENST00000540798 IL20RAQ9UHF4 553 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 DAPK2Q9UIK4 370 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 SSR3Q9UNL2 185 aa12.71□□□□□ -0.37
RTN3-210ENST00000540798 ISPDA4D126 451 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 CDC123O75794 336 aaPredicted RBP12.71□□□□□ -0.38
RTN3-210ENST00000540798 PIAS2O75928 621 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 RCBTB2O95199 551 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 APOL3O95236 402 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 PTNP21246 168 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 PSMD4P55036 377 aaKnown RBP12.71□□□□□ -0.38
RTN3-210ENST00000540798 DSG2Q14126 1118 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 ZNF267Q14586 743 aaPredicted RBP12.71□□□□□ -0.38
RTN3-210ENST00000540798 CXXC5Q7LFL8 322 aaKnown RBP12.71□□□□□ -0.38
RTN3-210ENST00000540798 SPEM1Q8N4L4 309 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 PARP16Q8N5Y8 322 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 C16orf52Q8NHV5 167 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 DNASE2BQ8WZ79 361 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 ZDHHC12Q96GR4 267 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 HSPA12BQ96MM6 686 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 OR10A5Q9H207 317 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 CSNK1G3Q9Y6M4 447 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms