RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 PTCHD4Q6ZW05 846 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 PRICKLE2Q7Z3G6 844 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 UBE2J2Q8N2K1 259 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 CAMKK1Q8N5S9 505 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 ASCC1Q8N9N2 400 aaKnown RBP9.96□□□□□ -0.82
CLIP1-210ENST00000538120 HOXB13Q92826 284 aaPredicted RBP9.96□□□□□ -0.82
CLIP1-210ENST00000538120 FYTTD1Q96QD9 318 aaKnown RBP9.96□□□□□ -0.82
CLIP1-210ENST00000538120 TMEM246Q9BRR3 403 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 RBCK1Q9BYM8 510 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 SAP130Q9H0E3 1048 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 PAQR5Q9NXK6 330 aaPredicted RBP9.96□□□□□ -0.82
CLIP1-210ENST00000538120 HCN3Q9P1Z3 774 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 CLCA2Q9UQC9 943 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 CLDN16Q9Y5I7 305 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 GON4LQ3T8J9 2241 aa9.96□□□□□ -0.82
CLIP1-210ENST00000538120 USP34Q70CQ2 3546 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 EFCAB10A6NFE3 127 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 CPSF4LA6NMK7 179 aaKnown RBP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 VSTM5A8MXK1 200 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 J3QL48 77 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 RPS4Y1P22090 263 aaKnown RBP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 AVPR1BP47901 424 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 HNRNPKP61978 463 aaKnown RBP eCLIP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 SNRPGP62308 76 aaKnown RBP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 MAT1AQ00266 395 aaKnown RBP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 SNAP47Q5SQN1 464 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 DCST2Q5T1A1 773 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 NKAIN2Q5VXU1 208 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 PLAG1Q6DJT9 500 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 LSRQ86X29 649 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 MEX3DQ86XN8 651 aaKnown RBP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 GALNT12Q8IXK2 581 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 CDRT4Q8N9R6 151 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 DNASE2BQ8WZ79 361 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 RBM18Q96H35 190 aaKnown RBP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 CCDC32Q9BV29 185 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 RERGLQ9H628 205 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 DUSP22Q9NRW4 184 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 TMEM131Q92545 1883 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 A0A1W2PQ09 198 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 GXYLT2A0PJZ3 443 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 MEIOCA2RUB1 952 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 SMIM30A4D0T7 59 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 CENPXA8MT69 81 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 LRRTM2O43300 516 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 SCO2O43819 266 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 PIAS2O75928 621 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 GALNSP34059 522 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 ZNF136P52737 540 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 TAS2R41P59536 307 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 MAP4K2Q12851 820 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 ERV3-1Q14264 604 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 CDK10Q15131 360 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 GPR68Q15743 365 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 C14orf28Q4W4Y0 310 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 ENTPD8Q5MY95 495 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 ZCCHC12Q6PEW1 402 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 KIF18BQ86Y91 864 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 LINC00471Q8N535 108 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 TGM7Q96PF1 710 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 SNX18Q96RF0 628 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 STACQ99469 402 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 SLC25A19Q9HC21 320 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 RANGRFQ9HD47 186 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 DNAJC27Q9NZQ0 273 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 SATB2Q9UPW6 733 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 TMEM184BQ9Y519 407 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-210ENST00000538120 RNF215Q9Y6U7 377 aa9.95□□□□□ -0.82
CLIP1-210ENST00000538120 SH3D21A4FU49 640 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 OR2W5A6NFC9 320 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 H3BN98 237 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 MPZL2O60487 215 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 CSO75390 466 aaKnown RBP9.94□□□□□ -0.82
CLIP1-210ENST00000538120 DCNP07585 359 aaKnown RBP9.94□□□□□ -0.82
CLIP1-210ENST00000538120 IL7P13232 177 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 TNNI3P19429 210 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 FNTBP49356 437 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 ZP2Q05996 745 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 TRAM2Q15035 370 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 TMEM201Q5SNT2 666 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 ZAR1Q86SH2 424 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 RAB43Q86YS6 212 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 NKAIN4Q8IVV8 208 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 SLC34A3Q8N130 599 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 ZNF619Q8N2I2 560 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 IQCF1Q8N6M8 205 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 OR52R1Q8NGF1 315 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 SNIP1Q8TAD8 396 aaKnown RBP9.94□□□□□ -0.82
CLIP1-210ENST00000538120 NR4A3Q92570 626 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 PEX11GQ96HA9 241 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 GUCD1Q96NT3 240 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 MCHR1Q99705 422 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 SPRTNQ9H040 489 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-210ENST00000538120 IL20Q9NYY1 176 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 NPAP1Q9NZP6 1156 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 NUFIP1Q9UHK0 495 aaKnown RBP9.94□□□□□ -0.82
CLIP1-210ENST00000538120 SLC13A4Q9UKG4 626 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 PLCL2Q9UPR0 1127 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 TRAPPC4Q9Y296 219 aa9.94□□□□□ -0.82
CLIP1-210ENST00000538120 A0A075B6Q4 140 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms