RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 DPH7Q9BTV6 452 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 ALG12Q9BV10 488 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 TM2D1Q9BX74 207 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 SPATA16Q9BXB7 569 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 PPDPFQ9H3Y8 114 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 GPN2Q9H9Y4 310 aaPredicted RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 PLGRKTQ9HBL7 147 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 FANCFQ9NPI8 374 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 ZNF446Q9NWS9 450 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 GNG12Q9UBI6 72 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 XPO7Q9UIA9 1087 aaKnown RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 ANAPC7Q9UJX3 599 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 B9D1Q9UPM9 204 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 RALGAPA1Q6GYQ0 2036 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 ZSCAN5BA6NJL1 495 aa2□□□□□ -2.09
CD44-238ENST00000534296 NPIPA7E9PJI5 369 aa2□□□□□ -2.09
CD44-238ENST00000534296 ANGPT2O15123 496 aa2□□□□□ -2.09
CD44-238ENST00000534296 MAGEB3O15480 346 aa2□□□□□ -2.09
CD44-238ENST00000534296 HCN1O60741 890 aa2□□□□□ -2.09
CD44-238ENST00000534296 BCAS1O75363 584 aaPredicted RBP2□□□□□ -2.09
CD44-238ENST00000534296 ZNF254O75437 659 aa2□□□□□ -2.09
CD44-238ENST00000534296 SERF1AO75920 110 aa2□□□□□ -2.09
CD44-238ENST00000534296 CABYRO75952 493 aa2□□□□□ -2.09
CD44-238ENST00000534296 STSP08842 583 aa2□□□□□ -2.09
CD44-238ENST00000534296 H2BFMP0C1H6 154 aa2□□□□□ -2.09
CD44-238ENST00000534296 NPIPA8P0DM63 369 aa2□□□□□ -2.09
CD44-238ENST00000534296 ZNF19P17023 458 aa2□□□□□ -2.09
CD44-238ENST00000534296 HNRNPA2B1P22626 353 aaKnown RBP2□□□□□ -2.09
CD44-238ENST00000534296 GABRR1P24046 479 aa2□□□□□ -2.09
CD44-238ENST00000534296 NMT1P30419 496 aaKnown RBP2□□□□□ -2.09
CD44-238ENST00000534296 ADSSP30520 456 aa2□□□□□ -2.09
CD44-238ENST00000534296 IL2RGP31785 369 aa2□□□□□ -2.09
CD44-238ENST00000534296 RDXP35241 583 aaKnown RBP2□□□□□ -2.09
CD44-238ENST00000534296 PLA2G16P53816 162 aa2□□□□□ -2.09
CD44-238ENST00000534296 MRPS11P82912 194 aaKnown RBP2□□□□□ -2.09
CD44-238ENST00000534296 CBX1P83916 185 aa2□□□□□ -2.09
CD44-238ENST00000534296 CSTF1Q05048 431 aaKnown RBP2□□□□□ -2.09
CD44-238ENST00000534296 ZNF154Q13106 437 aa2□□□□□ -2.09
CD44-238ENST00000534296 ORC2Q13416 577 aaPredicted RBP2□□□□□ -2.09
CD44-238ENST00000534296 CFAP221Q4G0U5 840 aa2□□□□□ -2.09
CD44-238ENST00000534296 NCR3LG1Q68D85 454 aa2□□□□□ -2.09
CD44-238ENST00000534296 ZNF57Q68EA5 555 aaPredicted RBP2□□□□□ -2.09
CD44-238ENST00000534296 CGB2Q6NT52 195 aa2□□□□□ -2.09
CD44-238ENST00000534296 CCDC80Q76M96 950 aa2□□□□□ -2.09
CD44-238ENST00000534296 HSD17B13Q7Z5P4 300 aaPredicted RBP2□□□□□ -2.09
CD44-238ENST00000534296 MOB3BQ86TA1 216 aa2□□□□□ -2.09
CD44-238ENST00000534296 TPRA1Q86W33 373 aa2□□□□□ -2.09
CD44-238ENST00000534296 CLDN19Q8N6F1 224 aa2□□□□□ -2.09
CD44-238ENST00000534296 C14orf178Q8N769 122 aaPredicted RBP2□□□□□ -2.09
CD44-238ENST00000534296 C15orf54Q8N8G6 183 aa2□□□□□ -2.09
CD44-238ENST00000534296 ATP6V0D2Q8N8Y2 350 aa2□□□□□ -2.09
CD44-238ENST00000534296 DENND6BQ8NEG7 585 aa2□□□□□ -2.09
CD44-238ENST00000534296 OR10A7Q8NGE5 316 aa2□□□□□ -2.09
CD44-238ENST00000534296 OR13F1Q8NGS4 319 aa2□□□□□ -2.09
CD44-238ENST00000534296 SPRYD4Q8WW59 207 aaPredicted RBP2□□□□□ -2.09
CD44-238ENST00000534296 SLC5A11Q8WWX8 675 aa2□□□□□ -2.09
CD44-238ENST00000534296 RLN3Q8WXF3 142 aa2□□□□□ -2.09
CD44-238ENST00000534296 RAPGEF5Q92565 580 aa2□□□□□ -2.09
CD44-238ENST00000534296 MRPS31Q92665 395 aaKnown RBP2□□□□□ -2.09
CD44-238ENST00000534296 C7orf34Q96L11 122 aa2□□□□□ -2.09
CD44-238ENST00000534296 RANBP9Q96S59 729 aa2□□□□□ -2.09
CD44-238ENST00000534296 SDHCQ99643 169 aaPredicted RBP2□□□□□ -2.09
CD44-238ENST00000534296 OMDQ99983 421 aa2□□□□□ -2.09
CD44-238ENST00000534296 NICN1Q9BSH3 213 aa2□□□□□ -2.09
CD44-238ENST00000534296 TMEM121Q9BTD3 319 aa2□□□□□ -2.09
CD44-238ENST00000534296 MRPL13Q9BYD1 178 aaKnown RBP2□□□□□ -2.09
CD44-238ENST00000534296 EHD1Q9H4M9 534 aa2□□□□□ -2.09
CD44-238ENST00000534296 CAB39LQ9H9S4 337 aa2□□□□□ -2.09
CD44-238ENST00000534296 MEPEQ9NQ76 525 aaPredicted RBP2□□□□□ -2.09
CD44-238ENST00000534296 CGNQ9P2M7 1197 aaKnown RBP2□□□□□ -2.09
CD44-238ENST00000534296 BTNL2Q9UIR0 455 aa2□□□□□ -2.09
CD44-238ENST00000534296 NPIPA1Q9UND3 350 aa2□□□□□ -2.09
CD44-238ENST00000534296 IFT52Q9Y366 437 aa2□□□□□ -2.09
CD44-238ENST00000534296 PARD3Q8TEW0 1356 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 C15orf38-AP3S2A0A0A6YYH1 394 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 IGHV7-81A0A0B4J1V7 117 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 IGHV3-35A0A0C4DH35 117 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 A0A1B0GWJ7 208 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 A0A1W2PNV4 684 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 TRIM49D1C9J1S8 452 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 H3BMQ9 156 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 GOLGA8SH3BPF8 625 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 SDHDO14521 159 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 MSH4O15457 936 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 NUDT21O43809 227 aaKnown RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 LANCL1O43813 399 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 LYPLA1O75608 230 aaPredicted RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 GPX5O75715 221 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 BBOX1O75936 387 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 LYPD3O95274 346 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 LALBAP00709 142 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 ALOX5P09917 674 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 OR8U8P0C7N1 319 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 DBTP11182 482 aaKnown RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 TBXA2RP21731 343 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 FASP25445 335 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 BDKRB1P46663 353 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 ACADVLP49748 655 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 DIO3P55073 304 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 NCBP1Q09161 790 aaKnown RBP1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms