RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CLCF1Q9UBD9 225 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 AP4B1Q9Y6B7 739 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 FAM47E-STBD1D6RA91 191 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 CLIC1O00299 241 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 ZNF264O43296 627 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 ANP32DO95626 131 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 TROVE2P10155 538 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS28-216ENST00000533806 UBL4AP11441 157 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 DLX5P56178 289 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 CLDN20P56880 219 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 GPAT3Q53EU6 434 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 EIF3MQ7L2H7 374 aaKnown RBP11.7□□□□□ -0.54
VPS28-216ENST00000533806 C10orf111Q8N326 155 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 DPP10Q8N608 796 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 C9orf106Q8NAJ2 232 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 TOR1AIP2Q8NFQ8 470 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 CA5BP1Q8WTZ4 195 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 SLC38A5Q8WUX1 472 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 WNT2BQ93097 391 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 ADGRG7Q96K78 797 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 TRIB1Q96RU8 372 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 QRSL1Q9H0R6 528 aaKnown RBP11.7□□□□□ -0.54
VPS28-216ENST00000533806 THUMPD1Q9NXG2 353 aaKnown RBP11.7□□□□□ -0.54
VPS28-216ENST00000533806 VDAC3Q9Y277 283 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 FBN2P35556 2912 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 PCNX3Q9H6A9 2034 aa11.7□□□□□ -0.54
VPS28-216ENST00000533806 PHF3Q92576 2039 aaKnown RBP11.69□□□□□ -0.54
VPS28-216ENST00000533806 CLDN24A6NM45 220 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 CLCA1A8K7I4 914 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 HSPB2A8KAH6 182 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 PRSS44E7EML9 344 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 H0Y3Z8 333 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 C19orf84I3L1E1 186 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 GTPBP1O00178 669 aaKnown RBP11.69□□□□□ -0.54
VPS28-216ENST00000533806 ADAMDEC1O15204 470 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 ADAM11O75078 769 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 RCBTB2O95199 551 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 NUDT7P0C024 238 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 NID1P14543 1247 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 PRKCAP17252 672 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 IGFBP2P18065 325 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 GPX2P18283 190 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 POU3F2P20265 443 aaPredicted RBP11.69□□□□□ -0.54
VPS28-216ENST00000533806 IL11P20809 199 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 ADH6P28332 368 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 EIF1P41567 113 aaKnown RBP11.69□□□□□ -0.54
VPS28-216ENST00000533806 CRATP43155 626 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 ZNF41P51814 821 aaPredicted RBP11.69□□□□□ -0.54
VPS28-216ENST00000533806 ZNF136P52737 540 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 ARFIP2P53365 341 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 DSTNP60981 165 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 RAC1P63000 192 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 KCNJ10P78508 379 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 SRYQ05066 204 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 HSPB2Q16082 182 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 CTU2Q2VPK5 515 aaKnown RBP11.69□□□□□ -0.54
VPS28-216ENST00000533806 PLXDC2Q6UX71 529 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 METTL25Q8N6Q8 603 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 OR10Q1Q8NGQ4 319 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 RNF145Q96MT1 663 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 RSPO3Q9BXY4 272 aaPredicted RBP11.69□□□□□ -0.54
VPS28-216ENST00000533806 UCK2Q9BZX2 261 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 IKZF5Q9H5V7 419 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 A4GALTQ9NPC4 353 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 CHST11Q9NPF2 352 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 EXOSC3Q9NQT5 275 aaKnown RBP11.69□□□□□ -0.54
VPS28-216ENST00000533806 SAR1AQ9NR31 198 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 KLHL14Q9P2G3 628 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 P2RX2Q9UBL9 471 aa11.69□□□□□ -0.54
VPS28-216ENST00000533806 ZNF629Q9UEG4 869 aaPredicted RBP11.69□□□□□ -0.54
VPS28-216ENST00000533806 TACC2O95359 2948 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 H3BML4 177 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 FBP2O00757 339 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 TGM6O95932 706 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 CSTAP01040 98 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 SNRPB2P08579 225 aaKnown RBP11.68□□□□□ -0.54
VPS28-216ENST00000533806 NR2F1P10589 423 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 FOXF1Q12946 379 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 FADDQ13158 208 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 ADRM1Q16186 407 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 RUNDC3AQ59EK9 446 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 ZNF787Q6DD87 383 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 CMIPQ8IY22 773 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 ZNF614Q8N883 585 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 C10orf82Q8WW14 230 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 TMEM19Q96HH6 336 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 MRGPRX4Q96LA9 322 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 THUMPD3Q9BV44 507 aaKnown RBP11.68□□□□□ -0.54
VPS28-216ENST00000533806 ENKD1Q9H0I2 346 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 BCL2L10Q9HD36 194 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 NPDC1Q9NQX5 325 aaPredicted RBP11.68□□□□□ -0.54
VPS28-216ENST00000533806 LEF1Q9UJU2 399 aaPredicted RBP11.68□□□□□ -0.54
VPS28-216ENST00000533806 SLC35A3Q9Y2D2 325 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 NDUFAF1Q9Y375 327 aa11.68□□□□□ -0.54
VPS28-216ENST00000533806 GPC6Q9Y625 555 aaPredicted RBP11.68□□□□□ -0.54
VPS28-216ENST00000533806 TEX15Q9BXT5 2789 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 NOTCH2Q04721 2471 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 APCP25054 2843 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 A0A0G2JPF8 293 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms