RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PRKCAP17252 672 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 S100A3P33764 101 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 PGM1P36871 562 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 CLNS1AP54105 237 aaKnown RBP9.55□□□□□ -0.88
CD44-227ENST00000528086 CHRNEQ04844 493 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 FAM27E3Q08E93 113 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 GPR68Q15743 365 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 SYPL1Q16563 259 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 SLC25A53Q5H9E4 307 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 LUZP2Q86TE4 346 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 RNF130Q86XS8 419 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 MSRB3Q8IXL7 192 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 C10orf111Q8N326 155 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 OR10D3Q8NH80 312 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 FBXO27Q8NI29 283 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 PIWIL2Q8TC59 973 aaKnown RBP9.55□□□□□ -0.88
CD44-227ENST00000528086 VPS33AQ96AX1 596 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 ROPN1LQ96C74 230 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 CHMP6Q96FZ7 201 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 C7orf26Q96N11 449 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 ZFP3Q96NJ6 502 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 GPATCH1Q9BRR8 931 aaKnown RBP9.55□□□□□ -0.88
CD44-227ENST00000528086 SLC35A5Q9BS91 424 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 OPN3Q9H1Y3 402 aaPredicted RBP9.55□□□□□ -0.88
CD44-227ENST00000528086 SLC38A1Q9H2H9 487 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 RUBCNLQ9H714 662 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 NKIRAS1Q9NYS0 192 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 ING1Q9UK53 422 aaPredicted RBP9.55□□□□□ -0.88
CD44-227ENST00000528086 CLEC4AQ9UMR7 237 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 CHST2Q9Y4C5 530 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 RAI1Q7Z5J4 1906 aaPredicted RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 ITPR3Q14573 2671 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 TRPC5OSA6NMA1 111 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 LINC01387J3KSC0 135 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 TNFSF11O14788 317 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 CXCL13O43927 109 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 STX11O75558 287 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 H6PDO95479 791 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 GUSBP08236 651 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 DDX5P17844 614 aaKnown RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 RPS4Y1P22090 263 aaKnown RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 EDNRAP25101 427 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 LOXP28300 417 aaPredicted RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 KIR2DL3P43628 341 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 CLK3P49761 638 aaKnown RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 IDH3AP50213 366 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 P2RX1P51575 399 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 RAC1P63000 192 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 FGFBP1Q14512 234 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 DAZAP2Q15038 168 aaPredicted RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 SF3B4Q15427 424 aaKnown RBP eCLIP9.54□□□□□ -0.88
CD44-227ENST00000528086 ANXA8L1Q5VT79 327 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 ATG16L1Q676U5 607 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 MTERF4Q7Z6M4 381 aaKnown RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 MISPQ8IVT2 679 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 KIRREL3Q8IZU9 778 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 MEIOBQ8N635 442 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 ZNF610Q8N9Z0 462 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 OR5W2Q8NH69 310 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 PNPT1Q8TCS8 783 aaKnown RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 ZFP90Q8TF47 636 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 XAGE5Q8WWM1 108 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 ZBTB8AQ96BR9 441 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 AURKBQ96GD4 344 aaPredicted RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 OR52E6Q96RD3 313 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 ZNF559Q9BR84 538 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 RBM24Q9BX46 236 aaKnown RBP9.54□□□□□ -0.88
CD44-227ENST00000528086 LAT2Q9GZY6 243 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 HOXD1Q9GZZ0 328 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 RASSF1Q9NS23 344 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 ZNF446Q9NWS9 450 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 ZNF175Q9Y473 711 aa9.54□□□□□ -0.88
CD44-227ENST00000528086 A6NNC1 897 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 SLCO1B7G3V0H7 640 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 EIF1AYO14602 144 aaKnown RBP9.53□□□□□ -0.88
CD44-227ENST00000528086 ZNF264O43296 627 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 SLC22A3O75751 556 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 CRHP06850 196 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 KRT16P08779 473 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 ATP6V1C1P21283 382 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 SFTPDP35247 375 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 GCKP35557 465 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 EIF1AXP47813 144 aaKnown RBP9.53□□□□□ -0.88
CD44-227ENST00000528086 MRPL19P49406 292 aaKnown RBP9.53□□□□□ -0.88
CD44-227ENST00000528086 SIRPAP78324 504 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 MYBPHQ13203 477 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 QPRTQ15274 297 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 DPY19L1Q2PZI1 675 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 NXNQ6DKJ4 435 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 DNAJC14Q6Y2X3 702 aaPredicted RBP9.53□□□□□ -0.88
CD44-227ENST00000528086 LILRA2Q8N149 483 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 OR2V1Q8NHB1 315 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 FAM222BQ8WU58 562 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 ROBO4Q8WZ75 1007 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 CNOT9Q92600 299 aaKnown RBP9.53□□□□□ -0.88
CD44-227ENST00000528086 GTF2H4Q92759 462 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 OSTF1Q92882 214 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 THUMPD3Q9BV44 507 aaKnown RBP9.53□□□□□ -0.88
CD44-227ENST00000528086 PAIP1Q9H074 479 aaKnown RBP9.53□□□□□ -0.88
CD44-227ENST00000528086 SLC25A37Q9NYZ2 338 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms