RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 MAJINQ3KP22 176 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 CELF3Q5SZQ8 465 aaKnown RBP3.33□□□□□ -1.88
CD44-223ENST00000526553 SLX4IPQ5VYV7 408 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 PNCKQ6P2M8 343 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 C2orf66Q6UXQ4 117 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 HSD11B1LQ7Z5J1 315 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 KRTAP11-1Q8IUC1 163 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 PRR22Q8IZ63 422 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 CLDN19Q8N6F1 224 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 ZSCAN4Q8NAM6 433 aaPredicted RBP3.33□□□□□ -1.88
CD44-223ENST00000526553 OR13C2Q8NGS9 318 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 NANPQ8TBE9 248 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 FNDC8Q8TC99 324 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 DNAJA3Q96EY1 480 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 SLC41A3Q96GZ6 507 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 PIWIL1Q96J94 861 aaKnown RBP3.33□□□□□ -1.88
CD44-223ENST00000526553 SLC39A3Q9BRY0 314 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 APMAPQ9HDC9 416 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 TIGARQ9NQ88 270 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 AIPL1Q9NZN9 384 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 BARX2Q9UMQ3 279 aaPredicted RBP3.33□□□□□ -1.88
CD44-223ENST00000526553 NPIPA1Q9UND3 350 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 KANK1Q14678 1352 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 ERICH3Q5RHP9 1530 aa3.33□□□□□ -1.88
CD44-223ENST00000526553 TRABD2BA6NFA1 517 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 E7ENQ6 273 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 H0Y8G0 127 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 SNNO75324 88 aaPredicted RBP3.32□□□□□ -1.88
CD44-223ENST00000526553 SURF6O75683 361 aaKnown RBP3.32□□□□□ -1.88
CD44-223ENST00000526553 SCGNO76038 276 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 TM7SF2O76062 418 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 IGFBP1P08833 259 aaPredicted RBP3.32□□□□□ -1.88
CD44-223ENST00000526553 HBQ1P09105 142 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 CPN1P15169 458 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 TPSB2P20231 275 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 IGFBP5P24593 272 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 SULT1E1P49888 294 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 ERVPABLB-1P60509 514 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 UBE2HP62256 183 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 ZMYND11Q15326 602 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 TPSAB1Q15661 275 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 ZIC1Q15915 447 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 MAPK6Q16659 721 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 RABL6Q3YEC7 729 aaPredicted RBP3.32□□□□□ -1.88
CD44-223ENST00000526553 PYHIN1Q6K0P9 492 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 PMF1Q6P1K2 205 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 ADAMTSL5Q6ZMM2 481 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 LANCL3Q6ZV70 420 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 BHLHE23Q8NDY6 225 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 IL1F10Q8WWZ1 152 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 RAB3CQ96E17 227 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 C11orf24Q96F05 449 aaPredicted RBP3.32□□□□□ -1.88
CD44-223ENST00000526553 C9orf85Q96MD7 179 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 PSKH2Q96QS6 385 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 SECISBP2Q96T21 854 aaKnown RBP3.32□□□□□ -1.88
CD44-223ENST00000526553 CRNKL1Q9BZJ0 848 aaKnown RBP3.32□□□□□ -1.88
CD44-223ENST00000526553 POLR3FQ9H1D9 316 aaPredicted RBP3.32□□□□□ -1.88
CD44-223ENST00000526553 ELOVL3Q9HB03 270 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 PIPOXQ9P0Z9 390 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 CLEC4EQ9ULY5 219 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 ASB3Q9Y575 518 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 MAD1L1Q9Y6D9 718 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 PTPRGP23470 1445 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 KIF21BO75037 1637 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 BIVM-ERCC5R4GMW8 1640 aa3.32□□□□□ -1.88
CD44-223ENST00000526553 PLB1Q6P1J6 1458 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 FAM240BA0A1B0GVZ2 78 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 ESYT2A0FGR8 921 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 EFCAB7A8K855 629 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 BTN3A3O00478 584 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 TNFSF11O14788 317 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 ARPC3O15145 178 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 GPAA1O43292 621 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 NEBLO76041 1014 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 JCHAINP01591 159 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 H2BFMP0C1H6 154 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 SDC1P18827 310 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 PGCP20142 388 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 HNF1AP20823 631 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 DRD3P35462 400 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 AP3M2P53677 418 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 RIPPLY1Q0D2K3 151 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 DDX39BQ13838 428 aaKnown RBP3.31□□□□□ -1.88
CD44-223ENST00000526553 GANABQ14697 944 aaKnown RBP3.31□□□□□ -1.88
CD44-223ENST00000526553 CAMK4Q16566 473 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 SEL1L2Q5TEA6 688 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 ATF7IP2Q5U623 682 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 SYT10Q6XYQ8 523 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 STAC2Q6ZMT1 411 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 Q6ZPB1 254 aaPredicted RBP3.31□□□□□ -1.88
CD44-223ENST00000526553 EFL1Q7Z2Z2 1120 aaKnown RBP3.31□□□□□ -1.88
CD44-223ENST00000526553 IFNEQ86WN2 208 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 OR10A7Q8NGE5 316 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 TUBGCP3Q96CW5 907 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 PHYHIPLQ96FC7 376 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 COQ2Q96H96 371 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 RIT2Q99578 217 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 TUBGCP2Q9BSJ2 902 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 CAPS2Q9BXY5 557 aa3.31□□□□□ -1.88
CD44-223ENST00000526553 DUSP16Q9BY84 665 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms