RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 C9orf66Q5T8R8 295 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 KCTD11Q693B1 232 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 TRAT1Q6PIZ9 186 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 METAP1DQ6UB28 335 aaPredicted RBP3.05□□□□□ -1.92
CD44-217ENST00000525348 VITQ6UXI7 678 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 TRMT11Q7Z4G4 463 aaKnown RBP3.05□□□□□ -1.92
CD44-217ENST00000525348 TMCO2Q7Z6W1 182 aaPredicted RBP3.05□□□□□ -1.92
CD44-217ENST00000525348 TAC4Q86UU9 113 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 CATSPER3Q86XQ3 398 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 HIPK1Q86Z02 1210 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 CNTN4Q8IWV2 1026 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 GPR65Q8IYL9 337 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 ELMOD2Q8IZ81 293 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 IQCKQ8N0W5 287 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 MRPL43Q8N983 215 aaKnown RBP3.05□□□□□ -1.92
CD44-217ENST00000525348 LEMD2Q8NC56 503 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 ICA1LQ8NDH6 482 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 OR4Q3Q8NH05 313 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 DTD1Q8TEA8 209 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 CCDC12Q8WUD4 166 aaPredicted RBP3.05□□□□□ -1.92
CD44-217ENST00000525348 OR1E3Q8WZA6 343 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 TNFRSF14Q92956 283 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 ST6GALNAC6Q969X2 333 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 DUS3LQ96G46 650 aaKnown RBP3.05□□□□□ -1.92
CD44-217ENST00000525348 SERAC1Q96JX3 654 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 CASD1Q96PB1 797 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 RACGAP1Q9H0H5 632 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 RIBC2Q9H4K1 309 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 MARCH7Q9H992 704 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 SIAEQ9HAT2 523 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 TIGARQ9NQ88 270 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 TUBG2Q9NRH3 451 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 GIN1Q9NXP7 522 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 SMPD3Q9NY59 655 aaPredicted RBP3.05□□□□□ -1.92
CD44-217ENST00000525348 SLC12A6Q9UHW9 1150 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 RNF24Q9Y225 148 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 CLCA3PQ9Y6N3 262 aa3.05□□□□□ -1.92
CD44-217ENST00000525348 SCAF11Q99590 1463 aaKnown RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 FAM135BQ49AJ0 1406 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 LRPPRCP42704 1394 aaKnown RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 GSTTP1A0A1W2PQM5 241 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ANXA2P2A6NMY6 339 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 F8VP50 259 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 PGRMC2O15173 223 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 TOX3O15405 576 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 NUPL2O15504 423 aaKnown RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 FLRT2O43155 660 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 PPIP5K2O43314 1243 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 VEGFDO43915 354 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 FCGR3BO75015 233 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 NOS1APO75052 506 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 CDH16O75309 829 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 CSDE1O75534 798 aaKnown RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 KRT75O95678 551 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 SNAP29O95721 258 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 CRYGCP07315 174 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 FHP07954 510 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 PLEKP08567 350 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 CD3GP09693 182 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 OR4E1P0C645 316 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 DUX4L4P0CJ87 422 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ADORA3P0DMS8 318 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 UMPSP11172 480 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 PTAFRP25105 342 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 KRTAP5-9P26371 169 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 LCN1P31025 176 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 HOXA9P31269 272 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 FEN1P39748 380 aaKnown RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 ACTR1BP42025 376 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 NPY4RP50391 375 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ATXN3P54252 364 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 ARF5P84085 180 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 LCP2Q13094 533 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 RPA4Q13156 261 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ART3Q13508 389 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 RCN2Q14257 317 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 GRB14Q14449 540 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 KNOP1Q1ED39 458 aaKnown RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 YIF1BQ5BJH7 314 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 PAGE2BQ5JRK9 111 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 TEX30Q5JUR7 227 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 MPP7Q5T2T1 576 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 LEMD1Q68G75 181 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ZNF770Q6IQ21 691 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 LRRC8BQ6P9F7 803 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 C5orf46Q6UWT4 87 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 TMEM182Q6ZP80 229 aaPredicted RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 ERN2Q76MJ5 926 aaKnown RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 TRMT10CQ7L0Y3 403 aaKnown RBP3.04□□□□□ -1.92
CD44-217ENST00000525348 CROCCP3Q8IVE0 287 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 BBS7Q8IWZ6 715 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 NELFCDQ8IXH7 590 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 THNSL1Q8IYQ7 743 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ZNF679Q8IYX0 411 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 ARFGAP2Q8N6H7 521 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 MLKLQ8NB16 471 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 MINDY2Q8NBR6 621 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 KLHL30-AS1Q8NEE0 82 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 OR13C2Q8NGS9 318 aa3.04□□□□□ -1.92
CD44-217ENST00000525348 PYROXD1Q8WU10 500 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms