RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MGST1P10620 155 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 NAT1P18440 290 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 TACR3P29371 465 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 HOXD13P35453 343 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 TAS2R38P59533 333 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 FXYD4P59646 89 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 OR5L2Q8NGL0 311 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC30A3Q99726 388 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 WDR77Q9BQA1 342 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 EXOSC3Q9NQT5 275 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 PRTFDC1Q9NRG1 225 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 ANHXE9PGG2 379 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 NSA2O95478 260 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 EOMESO95936 686 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CT45A6P0DMU7 189 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CT45A5P0DMU8 189 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CT45A7P0DMV0 189 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CT45A8P0DMV1 189 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CT45A9P0DMV2 189 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 GGT5P36269 586 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CLCNKAP51800 687 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CLCNKBP51801 687 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 GLO1Q04760 184 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 DLX2Q07687 328 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC10A1Q14973 349 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 FCN2Q15485 313 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CT45A2Q5DJT8 189 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CT45A1Q5HYN5 189 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 FRMPD2BQ6IN97 320 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 PIM3Q86V86 326 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 NRSN1Q8IZ57 195 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 MTURNQ8N3F0 131 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CT45A3Q8NHU0 189 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 MYOTQ9UBF9 498 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 IL36AQ9UHA7 158 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 IL20RAQ9UHF4 553 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SERTAD3Q9UJW9 196 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 FBXL2Q9UKC9 423 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 QRICH2Q9H0J4 1663 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CEBPZOSA8MTT3 80 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CXCL14O95715 111 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 TNFP01375 233 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SNHG28P0DPA3 235 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 ZNF44P15621 663 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 GABRA3P34903 492 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 GDNFP39905 211 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SUOXP51687 545 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 LRIT3Q3SXY7 679 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 ATPAF1Q5TC12 328 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 ABLIM2Q6H8Q1 611 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CHADLQ6NUI6 762 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 LYSMD2Q8IV50 215 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 FRMD1Q8N878 549 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SUMF1Q8NBK3 374 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 CCDC74AQ96AQ1 378 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM19Q96HH6 336 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 FBXL18Q96ME1 805 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 MVB12BQ9H7P6 319 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 DUS2Q9NX74 493 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 KCNG2Q9UJ96 466 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SPO11Q9Y5K1 396 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 MYO5CQ9NQX4 1742 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 A0A0B4J2A0 478 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 OR6C68A6NDL8 312 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 OR5K4A6NMS3 321 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 GPR37L1O60883 481 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SIGIRRQ6IA17 410 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC46A3Q7Z3Q1 461 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 NRMQ8IXM6 262 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SGCZQ96LD1 299 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 LRFN5Q96NI6 719 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 TECTBQ96PL2 329 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SMIM3Q9BZL3 60 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 FBRSQ9HAH7 460 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 SHPKQ9UHJ6 478 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 MAFBQ9Y5Q3 323 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 LRRIQ1Q96JM4 1722 aa10.59□□□□□ -0.71
LIMCH1-217ENST00000512946 A6NLC8 198 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC38A8A6NNN8 435 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 POM121CA8CG34 1229 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 GRXCR1A8MXD5 290 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 SCG5P05408 212 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 P2RX1P51575 399 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 CASP7P55210 303 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 RAB11AP62491 216 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 PCBP2Q15366 365 aaKnown RBP eCLIP10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 GRIK5Q16478 980 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 Q3ZCU0 254 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 LYPD4Q6UWN0 246 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF852Q6ZMS4 543 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 MEX3BQ6ZN04 569 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 RHOUQ7L0Q8 258 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 SPRED1Q7Z699 444 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 GPR137CQ8N3F9 429 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 BOLLQ8N9W6 283 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 NUDT9Q9BW91 350 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 PPP1R14DQ9NXH3 145 aa10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 SIDT1Q9NXL6 827 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-217ENST00000512946 CACFD1Q9UGQ2 172 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms