RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 M1APQ8TC57 530 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 HPSE2Q8WWQ2 592 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 CCDC106Q9BWC9 280 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 SAMD10Q9BYL1 202 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 RDH14Q9HBH5 336 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.41□□□□□ -1.06
VCAN-208ENST00000512590 LRP5LA4QPB2 252 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 ALOX12BO75342 701 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 OR8U8P0C7N1 319 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 UCNP55089 124 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 RTL8BQ17RB0 113 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 ENTPD8Q5MY95 495 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 RAD9BQ6WBX8 426 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 C19orf35Q6ZS72 473 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 TECPR1Q7Z6L1 1165 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 ZSWIM9Q86XI8 627 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 BEST3Q8N1M1 668 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 TRUB1Q8WWH5 349 aaKnown RBP8.41□□□□□ -1.06
VCAN-208ENST00000512590 FUBP1Q96AE4 644 aaKnown RBP8.41□□□□□ -1.06
VCAN-208ENST00000512590 VN1R3Q9BXE9 311 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 R4GN57 208 aa8.41□□□□□ -1.06
VCAN-208ENST00000512590 SOX14O95416 240 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 FCER1GP30273 86 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 EIF2DP41214 584 aaKnown RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 TGFBIQ15582 683 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 TRAM1Q15629 374 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 SMAD2Q15796 467 aaKnown RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 OR5M10Q6IEU7 315 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 B3GNT6Q6ZMB0 384 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ZNF704Q6ZNC4 412 aaPredicted RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 ZNF788Q6ZQV5 615 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 P2RY8Q86VZ1 359 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 DTX3Q8N9I9 347 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 C3orf58Q8NDZ4 430 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 TMIEQ8NEW7 156 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 OR2T33Q8NG76 320 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 OR14A16Q8NHC5 309 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 OR2T6Q8NHC8 308 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 IL17FQ96PD4 163 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ZNF382Q96SR6 550 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 BARD1Q99728 777 aaKnown RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 CHST8Q9H2A9 424 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 RIMS4Q9H426 269 aaPredicted RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 IKZF5Q9H5V7 419 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 TUBA4BQ9H853 241 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 SAR1AQ9NR31 198 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 RASD1Q9Y272 281 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 C20orf202A1L168 122 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 SOCS5O75159 536 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ZNF888P0CJ79 500 aaPredicted RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 PF4V1P10720 104 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ZNF14P17017 642 aaPredicted RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 HLA-DMAP28067 261 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 CCDC58Q4VC31 144 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ARFGAP1Q8N6T3 406 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ST8SIA4Q92187 359 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ZNF251Q9BRH9 671 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 NUDT22Q9BRQ3 303 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 MTG2Q9H4K7 406 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 NOX3Q9HBY0 568 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 COL5A2P05997 1499 aaPredicted RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 LOC730098B7Z3J9 87 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 IMPA2O14732 288 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 NOBOXO60393 691 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 CSO75390 466 aaKnown RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 MT-ND1P03886 318 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 PRF1P14222 555 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 CPEP16870 476 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 BCKDHBP21953 392 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 CHRNA4P43681 627 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 CASP7P55210 303 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 PCBP4P57723 403 aaKnown RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 HERVK_113P63132 956 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ERVK-8P63133 956 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 SLC35A1P78382 337 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 BAXQ07812 192 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 OR5I1Q13606 314 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 Q56UQ5 140 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 SYT6Q5T7P8 510 aaPredicted RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 PSAPL1Q6NUJ1 521 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 EPS8L1Q8TE68 723 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 SORCS2Q96PQ0 1159 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 ERVK-6Q9BXR3 956 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 REEP4Q9H6H4 257 aa8.4□□□□□ -1.06
VCAN-208ENST00000512590 DNMT3BQ9UBC3 853 aaKnown RBP8.4□□□□□ -1.06
VCAN-208ENST00000512590 OR51F1A6NGY5 319 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 GPR171O14626 319 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 T-ENOLP0DO92 83 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 CTRB1P17538 263 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 GGT1P19440 569 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 NPY1RP25929 384 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 RRN3P1Q2M238 152 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 LRRC10Q5BKY1 277 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 SLC6A19Q695T7 634 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 CTRB2Q6GPI1 263 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 C19orf48Q6RUI8 117 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 SIRT6Q8N6T7 355 aa8.4□□□□□ -1.07
VCAN-208ENST00000512590 PCNPQ8WW12 178 aaKnown RBP8.4□□□□□ -1.07
VCAN-208ENST00000512590 ASB11Q8WXH4 323 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms