RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SMARCD3Q6STE5 483 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PLET1Q6UQ28 207 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ASPGQ86U10 573 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TMEM99Q8N816 258 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SMIM10Q96HG1 83 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 HCAR1Q9BXC0 346 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 DPH1Q9BZG8 443 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR52D1Q9H346 318 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TBC1D29Q9UFV1 150 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ALG5Q9Y673 324 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 UNC119BA6NIH7 251 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 C12orf71A8MTZ7 269 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 BHLHE40O14503 412 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 LYRM1O43325 122 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 AGR2O95994 175 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 YES1P07947 543 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 IL32P24001 234 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RPS15AP62244 130 aaKnown RBP14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SIM1P81133 766 aaPredicted RBP14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 BDH1Q02338 343 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZP2Q05996 745 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 YIF1BQ5BJH7 314 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 NIPAL3Q6P499 406 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MZT2AQ6P582 158 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CCDC28AQ8IWP9 274 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SHISA5Q8N114 240 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FLVCR1-AS1Q8TAF5 88 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 DOK4Q8TEW6 326 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TM4SF19Q96DZ7 209 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 C12orf4Q9NQ89 552 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 C20orf141Q9NUB4 165 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR6C2Q9NZP2 312 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CLCA3PQ9Y6N3 262 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SGK494L7N484 410 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 P2RX6O15547 441 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 HRO43593 1189 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PSKH1P11801 424 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ELK1P19419 428 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TBXA2RP21731 343 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CFL1P23528 166 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MAT2AP31153 395 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CLDN20P56880 219 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 GPR68Q15743 365 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TRMT12Q53H54 448 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 EXOSC6Q5RKV6 272 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MEPCEQ7L2J0 689 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TCTE3Q8IZS6 198 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR4K14Q8NGD5 310 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR14C36Q8NHC7 312 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PFN4Q8NHR9 129 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 LCN9Q8WX39 176 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 KISS1RQ969F8 398 aaPredicted RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OTULINQ96BN8 352 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 UPRTQ96BW1 309 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SLC6A17Q9H1V8 727 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PPIL3Q9H2H8 161 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SIDT1Q9NXL6 827 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 BABAM2Q9NXR7 383 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 NLKQ9UBE8 527 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 KCNE5Q9UJ90 142 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PIAS3Q9Y6X2 628 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 COLEC10Q9Y6Z7 277 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PLRG1O43660 514 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RGS9O75916 674 aaPredicted RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 THBS1P07996 1170 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 GKN3PP0CG01 181 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PRKAR1AP10644 381 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RPS4Y1P22090 263 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RGS1Q08116 209 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TCEA2Q15560 299 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FHL5Q5TD97 284 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MZT2BQ6NZ67 158 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 GID4Q8IVV7 300 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ACBD7Q8N6N7 88 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ALG8Q9BVK2 526 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZNF350Q9GZX5 532 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MKRN2Q9H000 416 aaKnown RBP14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ATP13A2Q9NQ11 1180 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FBXO34Q9NWN3 711 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 HEBP2Q9Y5Z4 205 aa14.92□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TRAPPC13A5PLN9 417 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 APODP05090 189 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MTNR1BP49286 362 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SF3A2Q15428 464 aaKnown RBP14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ITPRIPL2Q3MIP1 535 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZNF776Q68DI1 518 aaPredicted RBP14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 USP53Q70EK8 1073 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 LIX1LQ8IVB5 337 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 YIPF7Q8N8F6 280 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 GRPEL2Q8TAA5 225 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZCCHC10Q8TBK6 192 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FANK1Q8TC84 345 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FAM131CQ96AQ9 280 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ART5Q96L15 291 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 HS6ST2Q96MM7 605 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR2A5Q96R48 311 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 UBL7Q96S82 380 aaPredicted RBP14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TBX5Q99593 518 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FN3KQ9H479 309 aa14.91□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SYNDIG1Q9H7V2 258 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms