RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 HSDL2Q6YN16 418 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 VN1R4Q7Z5H5 301 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 ADCK2Q7Z695 626 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 CCDC91Q7Z6B0 441 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 EXOC3L1Q86VI1 746 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 LACC1Q8IV20 430 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 SLC44A2Q8IWA5 706 aaPredicted RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 CNTN4Q8IWV2 1026 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 KLHDC8AQ8IYD2 350 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PRSS58Q8IYP2 241 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 CYP4Z2PQ8N1L4 340 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PRR26Q8N8Z3 221 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 ATG16L2Q8NAA4 619 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 APCDD1LQ8NCL9 501 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 NFAM1Q8NET5 270 aaPredicted RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 OR52K1Q8NGK4 314 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 CFAP61Q8NHU2 1237 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 UBE2E3Q969T4 207 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 FBXL8Q96CD0 374 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 LRRC39Q96DD0 335 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PHF21BQ96EK2 531 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PKP4Q99569 1192 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 CHP1Q99653 195 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 APOL2Q9BQE5 337 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 TTYH2Q9BSA4 534 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 DESI2Q9BSY9 194 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 HEMGNQ9BXL5 484 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 HDHD5Q9BXW7 423 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PIGMQ9H3S5 423 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 FAM96AQ9H5X1 160 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 CNOT10Q9H9A5 744 aaKnown RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 CHODLQ9H9P2 273 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 CALHM2Q9HA72 323 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 POPDC3Q9HBV1 291 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 LYRM4Q9HD34 91 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PNPLA3Q9NST1 481 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 HPF1Q9NWY4 346 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 NSMCE4AQ9NXX6 385 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 PSD3Q9NYI0 1048 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 C6orf203Q9P0P8 240 aaPredicted RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 COPS7AQ9UBW8 275 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 TFR2Q9UP52 801 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 ZNF148Q9UQR1 794 aa3.52□□□□□ -1.85
USP54-217ENST00000498213 WBP11Q9Y2W2 641 aaKnown RBP3.52□□□□□ -1.85
USP54-217ENST00000498213 HERC2O95714 4834 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 FREM1Q5H8C1 2179 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 TRBV5-7A0A0A0MS05 114 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 HAT1O14929 419 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 RGS14O43566 566 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 HS6ST1O60243 411 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 KIAA0513O60268 411 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CEP104O60308 925 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CTNSO60931 367 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 SCELO95171 688 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 VAPBO95292 243 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 EPPINO95925 133 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 ACTL6AO96019 429 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 P04436 131 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 RHOXF2BP0C7M4 288 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 SMIM10L1P0DMW3 83 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 TNNT1P13805 278 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 GNAZP19086 355 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 IGFBP5P24593 272 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 IMPA1P29218 277 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 SERPINB3P29508 390 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CEACAM8P31997 349 aaPredicted RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 COMPP49747 757 aaPredicted RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 GPR143P51810 404 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CASP9P55211 416 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 SELENOVP59797 346 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 TBPL1P62380 186 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 PPIAP62937 165 aaKnown RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 SNTA1Q13424 505 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 THOC5Q13769 683 aaKnown RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 BRD3Q15059 726 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 ADPRMQ3LIE5 342 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 TMEM35AQ53FP2 167 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 PAGE2BQ5JRK9 111 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CTSL3PQ5NE16 218 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 FAM120AOSQ5T036 256 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 C1orf185Q5T7R7 199 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 MFSD4BQ5TF39 518 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 NSUN5P2Q63ZY6 315 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 DGAT2L7PQ6IED9 249 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 CYHR1Q6ZMK1 362 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 ADAMTSL2Q86TH1 951 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 MYLK4Q86YV6 388 aaPredicted RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 LRRC25Q8N386 305 aaPredicted RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 PRELID2Q8N945 189 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 RELL2Q8NC24 303 aaPredicted RBP3.51□□□□□ -1.85
USP54-217ENST00000498213 OR9A4Q8NGU2 314 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 SLC2A12Q8TD20 617 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 PAQR8Q8TEZ7 354 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 SNF8Q96H20 258 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 SMIM10Q96HG1 83 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 URB1-AS1Q96HZ7 61 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 RUNDC3BQ96NL0 473 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 PRAP1Q96NZ9 151 aa3.51□□□□□ -1.85
USP54-217ENST00000498213 IL17FQ96PD4 163 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms