RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 SERINC4A6NH21 518 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 FCMRO60667 390 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 SHOX2O60902 331 aaPredicted RBP14.8□□□□□ -0.04
SF3A1-209ENST00000496189 TNFRSF21O75509 655 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 DCTN3O75935 186 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 KRT34O76011 436 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 H6PDO95479 791 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 FAM107AO95990 144 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 CLDN18P56856 261 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 EEF1A1P68104 462 aaKnown RBP14.8□□□□□ -0.04
SF3A1-209ENST00000496189 RGNQ15493 299 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 SGCBQ16585 318 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 TRMT5Q32P41 509 aaKnown RBP14.8□□□□□ -0.04
SF3A1-209ENST00000496189 COX20Q5RI15 118 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 EEF1A1P5Q5VTE0 462 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 DLEU7Q6UYE1 221 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 GTPBP8Q8N3Z3 284 aaPredicted RBP14.8□□□□□ -0.04
SF3A1-209ENST00000496189 WNT2BQ93097 391 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 CMTM5Q96DZ9 223 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 SH3GL1Q99961 368 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 SLC24A3Q9HC58 644 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.8□□□□□ -0.04
SF3A1-209ENST00000496189 MED17Q9NVC6 651 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 PAQR5Q9NXK6 330 aaPredicted RBP14.8□□□□□ -0.04
SF3A1-209ENST00000496189 SLC25A37Q9NYZ2 338 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 VAPAQ9P0L0 249 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 SLAMF8Q9P0V8 285 aa14.8□□□□□ -0.04
SF3A1-209ENST00000496189 GPC6Q9Y625 555 aaPredicted RBP14.8□□□□□ -0.04
SF3A1-209ENST00000496189 SETXQ7Z333 2677 aaKnown RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 C7orf72A4D263 438 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 MBD3L4A6NDZ8 208 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 MBD3L3A6NE82 208 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 MBD3L5A6NJ08 208 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 GJE1A6NN92 205 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 CLCA1A8K7I4 914 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 NPIPB9F8W1W9 429 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 MRASO14807 208 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 UTP20O75691 2785 aaKnown RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 UGT2B17O75795 530 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 ETFAP13804 333 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 CD1EP15812 388 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 HOXB9P17482 250 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 BMP5P22003 454 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 OPRM1P35372 400 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 ADH7P40394 386 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 CRISP3P54108 245 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 B3GALT5-AS1P59052 145 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 PLPPR5Q32ZL2 321 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 OR2A2Q6IF42 318 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 TYW3Q6IPR3 259 aaKnown RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 LRRC74BQ6ZQY2 392 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 RETREG3Q86VR2 466 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 TNIP2Q8NFZ5 429 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 OR5M1Q8NGP8 315 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 OR5W2Q8NH69 310 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 MBD3L2Q8NHZ7 208 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 ANKRD27Q96NW4 1050 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 LRRC37BQ96QE4 947 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 CGREF1Q99674 301 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 THUMPD3Q9BV44 507 aaKnown RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 CCDC106Q9BWC9 280 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 PRRG4Q9BZD6 226 aa14.79□□□□□ -0.04
SF3A1-209ENST00000496189 MTHFD2LQ9H903 347 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 ZNF629Q9UEG4 869 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-209ENST00000496189 TRBV5-3A0A0A0MS03 114 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 SLC22A20A6NK97 555 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 C5orf58C9J3I9 102 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 UBTFL6P0CB48 400 aaPredicted RBP14.78□□□□□ -0.04
SF3A1-209ENST00000496189 TMIGD3P0DMS9 266 aaPredicted RBP14.78□□□□□ -0.04
SF3A1-209ENST00000496189 FCGR2AP12318 317 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 COX4I1P13073 169 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 UQCRBP14927 111 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 IL7RP16871 459 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 PGCP20142 388 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 CTSSP25774 331 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 ELK4P28324 431 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 ADH6P28332 368 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 CEACAM8P31997 349 aaPredicted RBP14.78□□□□□ -0.04
SF3A1-209ENST00000496189 RNF144AP50876 292 aaPredicted RBP14.78□□□□□ -0.04
SF3A1-209ENST00000496189 MVDP53602 400 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 RAC1P63000 192 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 SYPL1Q16563 259 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 RUNDC3AQ59EK9 446 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 GCNT6Q5T4J0 391 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 AP1ARQ63HQ0 302 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 REP15Q6BDI9 236 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 HIST2H2BCQ6DN03 193 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 PPP4R4Q6NUP7 873 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 FRRS1Q6ZNA5 592 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 MSRB3Q8IXL7 192 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 PEX5LQ8IYB4 626 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 METTL25Q8N6Q8 603 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 ANKS4BQ8N8V4 417 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 TMEM234Q8WY98 164 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 RNF145Q96MT1 663 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 UCN2Q96RP3 112 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 LAT2Q9GZY6 243 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 SAP130Q9H0E3 1048 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 MYLK2Q9H1R3 596 aa14.78□□□□□ -0.04
SF3A1-209ENST00000496189 ARMC7Q9H6L4 198 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms