RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CSNK1G2P78368 415 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PITPNAQ00169 270 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 UNC5DQ6UXZ4 953 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 BOLLQ8N9W6 283 aaKnown RBP10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GEMIN6Q8WXD5 167 aaKnown RBP10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARL5BQ96KC2 179 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR52A5Q9H2C5 316 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR6C2Q9NZP2 312 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CPNE7Q9UBL6 633 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 A0A1B0GVC2 190 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 A6NIN4 97 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF879B4DU55 563 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TXNL1O43396 289 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 AKAP8O43823 692 aaKnown RBP10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ENTPD6O75354 484 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR1D4P47884 311 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARHGDIBP52566 201 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARFIP1P53367 373 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KIAA1024LP59773 190 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MC2RQ01718 297 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OPCMLQ14982 345 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARTNQ5T4W7 220 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PRAMEF17Q5VTA0 474 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KANSL1Q7Z3B3 1105 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KLHDC8BQ8IXV7 354 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SYNPOQ8N3V7 929 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC44A3Q8N4M1 653 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LINC01555Q8NAE3 123 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR2L3Q8NG85 312 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR4K14Q8NGD5 310 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR6M1Q8NGM8 313 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TAAR2Q9P1P5 351 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CHD5Q8TDI0 1954 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KANTRA0A1W2PQU2 76 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SHOXO15266 292 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC19A2O60779 497 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HLA-DQA2P01906 255 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KCNAB1Q14722 419 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KIAA0040Q15053 153 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TEX261Q6UWH6 196 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF563Q8TA94 476 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC37A2Q8TED4 501 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZDHHC1Q8WTX9 485 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC22A18Q96BI1 424 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PTCHD1Q96NR3 888 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GAL3ST1Q99999 423 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NIT2Q9NQR4 276 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PTTG3PQ9NZH4 202 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 REV1Q9UBZ9 1251 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 U3KQ87 197 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SPDEFO95238 335 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 AIFM1O95831 613 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TFP02787 698 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FURINP09958 794 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NPR2P20594 1047 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HIST1H1TP22492 207 aaPredicted RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FAUP35544 74 aaKnown RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FGL1Q08830 312 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SAXO2Q658L1 398 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SFRP4Q6FHJ7 346 aaPredicted RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CCDC190Q86UF4 302 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 VRK2Q86Y07 508 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 C12orf45Q8N5I9 185 aaPredicted RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 VNN3Q9NY84 501 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 COPS3Q9UNS2 423 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NTNG1Q9Y2I2 539 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NAALAD2Q9Y3Q0 740 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PCDHGB1Q9Y5G3 927 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MRPL3P09001 348 aaKnown RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 F3P13726 295 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF14P17017 642 aaPredicted RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PCMT1P22061 227 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 UQCRC2P22695 453 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 AHCYP23526 432 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KIR2DL3P43628 341 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 BLKP51451 505 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CRISP1P54107 249 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PER3P56645 1201 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SMAD2Q15796 467 aaKnown RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ODF4Q2M2E3 257 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PHF19Q5T6S3 580 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GLCCI1Q86VQ1 547 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF454Q8N9F8 522 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CAMKVQ8NCB2 501 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SETD7Q8WTS6 366 aaKnown RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC38A5Q8WUX1 472 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PFDN5Q99471 154 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SPATA5L1Q9BVQ7 753 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 METTL17Q9H7H0 456 aaPredicted RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NEUROD4Q9HD90 331 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DHCR7Q9UBM7 475 aaKnown RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 STMND1H3BQB6 276 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 WISP3O95389 354 aaPredicted RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 WDPCPO95876 746 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CRYZQ08257 329 aaKnown RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF630Q2M218 657 aaPredicted RBP10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LHFPL3Q86UP9 236 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR52N2Q8NGI0 321 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 WDR20Q8TBZ3 569 aa10.04□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF566Q969W8 418 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms