RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SHEQ5VZ18 495 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 OLIG3Q7RTU3 272 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 MTERF4Q7Z6M4 381 aaKnown RBP19.25■□□□□ 0.67
USP40-215ENST00000484528 BIVMQ86UB2 503 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 WFDC8Q8IUA0 241 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 CLECL1Q8IZS7 167 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 TMCO5AQ8N6Q1 288 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 PPP1R14CQ8TAE6 165 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 ABHD3Q8WU67 409 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 CAVIN3Q969G5 261 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 PIGTQ969N2 578 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 ARSGQ96EG1 525 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 PERPQ96FX8 193 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 BHLHE41Q9C0J9 482 aaPredicted RBP19.25■□□□□ 0.67
USP40-215ENST00000484528 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.25■□□□□ 0.67
USP40-215ENST00000484528 ICAM5Q9UMF0 924 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 V9GYY5 206 aaPredicted RBP19.25■□□□□ 0.67
USP40-215ENST00000484528 H3BNH8 94 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 GTPBP1O00178 669 aaKnown RBP19.24■□□□□ 0.67
USP40-215ENST00000484528 ARHGEF9O43307 516 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 ITM2AO43736 263 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 NTN1O95631 604 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 TUBBP07437 444 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 INHBBP09529 407 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 FPR1P21462 350 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 ELK4P28324 431 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 EIF1P41567 113 aaKnown RBP19.24■□□□□ 0.67
USP40-215ENST00000484528 ETV4P43268 484 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 P2RX1P51575 399 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 CCR4P51679 360 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 ATP12AP54707 1039 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 OR4F3Q6IEY1 312 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 ALKBH2Q6NS38 261 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 NUDCD3Q8IVD9 361 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 ZNF524Q96C55 264 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 ACTR6Q9GZN1 396 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 HOXD1Q9GZZ0 328 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 SERHL2Q9H4I8 314 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 GLRX2Q9NS18 164 aa19.24■□□□□ 0.67
USP40-215ENST00000484528 FN1P02751 2386 aaKnown RBP19.24■□□□□ 0.67
USP40-215ENST00000484528 NPIPB9F8W1W9 429 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 ZNF195O14628 629 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 KLF4O43474 513 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 TMEM176BQ3YBM2 270 aaPredicted RBP19.23■□□□□ 0.67
USP40-215ENST00000484528 EMBQ6PCB8 327 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 BEND4Q6ZU67 534 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 STK32CQ86UX6 486 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 RNF128Q8TEB7 428 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 MOAP1Q96BY2 351 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 ZBTB9Q96C00 473 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 REXO5Q96IC2 774 aaKnown RBP19.23■□□□□ 0.67
USP40-215ENST00000484528 PIP5K1AQ99755 562 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 COQ10BQ9H8M1 238 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 CSPG4Q6UVK1 2322 aa19.23■□□□□ 0.67
USP40-215ENST00000484528 PLAUP00749 431 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 PRKCAP17252 672 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 CASP9P55211 416 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 SUMO3P55854 103 aaPredicted RBP19.22■□□□□ 0.67
USP40-215ENST00000484528 LTBQ06643 244 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 KRT71Q3SY84 523 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 BEX5Q5H9J7 111 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 PDZK1Q5T2W1 519 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 C20orf204Q6ZNR8 217 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 NUFIP2Q7Z417 695 aaKnown RBP19.22■□□□□ 0.67
USP40-215ENST00000484528 LRRC75A-AS1Q8N1F1 130 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 NATD1Q8N6N6 113 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 ZNF781Q8N8C0 355 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 GPR119Q8TDV5 335 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 CPNE4Q96A23 557 aaPredicted RBP19.22■□□□□ 0.67
USP40-215ENST00000484528 Q96MF0 132 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 SDF2Q99470 211 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 DTNAQ9Y4J8 743 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 GPC6Q9Y625 555 aaPredicted RBP19.22■□□□□ 0.67
USP40-215ENST00000484528 CADP27708 2225 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 ZANQ9Y493 2812 aa19.22■□□□□ 0.67
USP40-215ENST00000484528 IGHV3-15A0A0B4J1V0 119 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 CENPVL1A0A0U1RR11 272 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 RNF103-CHMP3A0A140T963 221 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 UBL4AP11441 157 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 NID1P14543 1247 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 PPP3CBP16298 524 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 CLDN8P56748 225 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 EMX2Q04743 252 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 ZNF844Q08AG5 666 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 MAD2L1Q13257 205 aaPredicted RBP19.21■□□□□ 0.67
USP40-215ENST00000484528 TSC22D1Q15714 1073 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 GPR68Q15743 365 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 CHI3L2Q15782 390 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 CLEC9AQ6UXN8 241 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 ZNF704Q6ZNC4 412 aaPredicted RBP19.21■□□□□ 0.67
USP40-215ENST00000484528 C6orf120Q7Z4R8 191 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 TUSC5Q8IXB3 177 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 CIARTQ8N365 385 aaPredicted RBP19.21■□□□□ 0.67
USP40-215ENST00000484528 ZFP90Q8TF47 636 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 PLPPR2Q96GM1 343 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 SLC35G5Q96KT7 338 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 FANCFQ9NPI8 374 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 NOP53Q9NZM5 478 aaKnown RBP19.21■□□□□ 0.67
USP40-215ENST00000484528 ACTL7BQ9Y614 415 aa19.21■□□□□ 0.67
USP40-215ENST00000484528 A0A1W2PNR3 127 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms