RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ATP12AP54707 1039 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 NR1H2P55055 460 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SUMO3P55854 103 aaPredicted RBP10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF844Q08AG5 666 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TOMM34Q15785 309 aaPredicted RBP10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PDSS1Q5T2R2 415 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GTF2IRD2BQ6EKJ0 949 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SEZ6L2Q6UXD5 910 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TFAP2EQ6VUC0 442 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF704Q6ZNC4 412 aaPredicted RBP10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PLEKHM3Q6ZWE6 761 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 NUFIP2Q7Z417 695 aaKnown RBP10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GTF2IRD2Q86UP8 949 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 RIBC1Q8N443 379 aaPredicted RBP10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 KRTCAP2Q8N6L1 136 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF611Q8N823 705 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OR2W6PQ8NHA6 318 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ROBO4Q8WZ75 1007 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HDHD5Q9BXW7 423 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ACTR6Q9GZN1 396 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TMEM185BQ9H7F4 350 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 COQ10BQ9H8M1 238 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GPC6Q9Y625 555 aaPredicted RBP10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TRIM64A6NGJ6 449 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TRIM64BA6NI03 449 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OVOL3O00110 214 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HS3ST1O14792 307 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PEX11AO75192 247 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PLGP00747 810 aaPredicted RBP10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PABPC4LP0CB38 370 aaKnown RBP10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HPGDP15428 266 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PRKCAP17252 672 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 DDX5P17844 614 aaKnown RBP10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ME2P23368 584 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 MAPK1P28482 360 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SERPINB5P36952 375 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HPCAL1P37235 193 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ETV4P43268 484 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HBA1P69905 142 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 FOXF1Q12946 379 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 RNPS1Q15287 305 aaKnown RBP10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 DCST2Q5T1A1 773 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 IL23RQ5VWK5 629 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 DNAJC14Q6Y2X3 702 aaPredicted RBP10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SZRD1Q7Z422 152 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TUSC5Q8IXB3 177 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 DDIASQ8IXT1 998 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OR56A1Q8NGH5 318 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 FBXO27Q8NI29 283 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PHOSPHO1Q8TCT1 267 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SFXN5Q8TD22 340 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TCP10LQ8TDR4 215 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ABHD3Q8WU67 409 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CPNE4Q96A23 557 aaPredicted RBP10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PERPQ96FX8 193 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PLPPR2Q96GM1 343 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SDF2Q99470 211 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 BHLHE41Q9C0J9 482 aaPredicted RBP10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SERHL2Q9H4I8 314 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ANKZF1Q9H8Y5 726 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 BCO1Q9HAY6 547 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 EML4Q9HC35 981 aaKnown RBP10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 KLHL13Q9P2N7 655 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 KCNE5Q9UJ90 142 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CARD8Q9Y2G2 431 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 DTNAQ9Y4J8 743 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ATRQ13535 2644 aa10.9□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 COL6A5A8TX70 2615 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NPIPA5A0A0B4J1W7 369 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TLDC2A0PJX2 215 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZNF814B7Z6K7 855 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NPIPA7E9PJI5 369 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TYROBPO43914 113 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SCN2BO60939 215 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PRKD3O94806 890 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 C6orf47O95873 294 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 YES1P07947 543 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 NPIPA8P0DM63 369 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 CREB1P16220 341 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PRPS1L1P21108 318 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SFTPDP35247 375 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 RAC3P60763 192 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZNF141Q15928 474 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 LSM12Q3MHD2 195 aaKnown RBP10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 TMEM176BQ3YBM2 270 aaPredicted RBP10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ATP6AP1LQ52LC2 224 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 SFRP5Q5T4F7 317 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZCCHC23Q6ZST2 131 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 FCRLAQ7L513 359 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 STK32CQ86UX6 486 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 PRIMA1Q86XR5 153 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZNF527Q8NB42 609 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 STEAP2Q8NFT2 490 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 RAB3IL1Q8TBN0 382 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ADAMTS15Q8TE58 950 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 JADE3Q92613 823 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 ZNF75CPQ92670 426 aaPredicted RBP10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 S100PBPQ96BU1 408 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 MOAP1Q96BY2 351 aa10.89□□□□□ -0.67
MSH5-SAPCD1-205ENST00000476085 MRGPRX4Q96LA9 322 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms