RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ERP44Q9BS26 406 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 PAXXQ9BUH6 204 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 TMEM117Q9H0C3 514 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 PAK1IP1Q9NWT1 392 aaPredicted RBP2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 VNN3Q9NY84 501 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 XPO7Q9UIA9 1087 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 SAMD4AQ9UPU9 718 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 IGLV8-61A0A075B6I0 122 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 A8MUI8 341 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 FCN1O00602 326 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 TBX19O60806 448 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 BCAS1O75363 584 aaPredicted RBP2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 CABYRO75952 493 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 LYPD3O95274 346 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 UQCRC2P22695 453 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 PSMA5P28066 241 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 ADSSP30520 456 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 DHPSP49366 369 aaPredicted RBP2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 STARP49675 285 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 PLA2G16P53816 162 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 RPL32P62910 135 aaKnown RBP2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 LAGE3Q14657 143 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 SYPL1Q16563 259 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 PDK4Q16654 411 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 NDUFA9Q16795 377 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 TIGITQ495A1 244 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 APTXQ7Z2E3 356 aaKnown RBP2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 KIAA1328Q86T90 577 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 DENND6BQ8NEG7 585 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 IPMKQ8NFU5 416 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 RPL3LQ92901 407 aaKnown RBP2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 PSMG2Q969U7 264 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 NOL4LQ96MY1 436 aaPredicted RBP2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 TTC25Q96NG3 672 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 OR5B2Q96R09 309 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC6A7Q99884 636 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 CITED1Q99966 193 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 ALG12Q9BV10 488 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 DUSP16Q9BY84 665 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 PPDPFQ9H3Y8 114 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 RMND5AQ9H871 391 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 CAB39LQ9H9S4 337 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 AATFQ9NY61 560 aaKnown RBP eCLIP2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 SPRR3Q9UBC9 169 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 GNG12Q9UBI6 72 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 OR10H1Q9Y4A9 318 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 OARD1Q9Y530 152 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 PPIAL4AQ9Y536 164 aa2.09□□□□□ -2.07
CCDC88A-212ENST00000474059 H3BMQ9 156 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 K7ENP7 123 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 K7EQM0 130 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 CPLX1O14810 134 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF254O75437 659 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 GPX5O75715 221 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 CA1P00915 261 aaPredicted RBP2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 IQCF3P0C7M6 154 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 RPA2P15927 270 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 ELK1P19419 428 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 PGCP20142 388 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 SERPINA2P20848 420 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 TBXA2RP21731 343 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 CHI3L1P36222 383 aaPredicted RBP2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 RPL29P47914 159 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 IFNAR2P48551 515 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 RGS4P49798 205 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF133P52736 654 aaPredicted RBP2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 RIPPLY1Q0D2K3 151 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 KIAA0040Q15053 153 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 PRR4Q16378 134 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 TPD52L1Q16890 204 aaPredicted RBP2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 TATDN3Q17R31 274 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 SLC5A12Q1EHB4 618 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 ANKDD1AQ495B1 522 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 GGTA1PQ4G0N0 100 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 FAHD2BQ6P2I3 314 aaPredicted RBP2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF677Q86XU0 584 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 APOBEC3FQ8IUX4 373 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 CADM2Q8N3J6 435 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 C15orf54Q8N8G6 183 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 OR13F1Q8NGS4 319 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 OR2T3Q8NH03 318 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 LINC01006Q8NI28 216 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 AENQ8WTP8 325 aaKnown RBP2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 FAM3CQ92520 227 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 HAVCR1Q96D42 359 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 FAHD2AQ96GK7 314 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 C12orf66Q96MD2 445 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 ZNF607Q96SK3 696 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 CYP2S1Q96SQ9 504 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 KIR2DL4Q99706 377 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 EBF4Q9BQW3 602 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 ELOVL3Q9HB03 270 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 WRAP73Q9P2S5 460 aaPredicted RBP2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 RPS6KB2Q9UBS0 482 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 RIMS3Q9UJD0 308 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 SNX6Q9UNH7 406 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 MOKQ9UQ07 419 aa2.08□□□□□ -2.08
CCDC88A-212ENST00000474059 WDR45Q9Y484 360 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms