RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 MTX2O75431 263 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SCO1O75880 301 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 RGS9O75916 674 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 POP4O95707 220 aaKnown RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TCRBP04435 133 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 IGHV4-34P06331 123 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 HOXD4P09016 255 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TFPIP10646 304 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 HOXB3P14651 431 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 IL32P24001 234 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 CD79BP40259 229 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 GRK6P43250 576 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 CSNK1EP49674 416 aaKnown RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 PCBP4P57723 403 aaKnown RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TBPL1P62380 186 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TSPAN31Q12999 210 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 FGFBP1Q14512 234 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 POU4F3Q15319 338 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 HNRNPA1L2Q32P51 320 aaKnown RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 KIAA0895LQ68EN5 471 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 NXPE4Q6UWF7 544 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 RTL4Q6ZR62 310 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 FGD2Q7Z6J4 655 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 LHFPL3Q86UP9 236 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 IQCHQ86VS3 1027 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TPRA1Q86W33 373 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 CACUL1Q86Y37 369 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TRAM1L1Q8N609 369 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 OR8K5Q8NH50 307 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SMPDL3AQ92484 453 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 MRGPRX3Q96LB0 322 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 RBP7Q96R05 134 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TREX2Q9BQ50 279 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 WFDC6Q9BQY6 131 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 PLA2G12AQ9BZM1 189 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 B3GNT4Q9C0J1 378 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 ACTR6Q9GZN1 396 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 BCL2L10Q9HD36 194 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 EVA1BQ9NVM1 165 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 UCKL1Q9NWZ5 548 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 P2RX2Q9UBL9 471 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 HS3ST2Q9Y278 367 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 DNMT3AQ9Y6K1 912 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SLCO1B1Q9Y6L6 691 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 CSNK1G3Q9Y6M4 447 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 CIB4A0PJX0 185 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TMEM202A6NGA9 273 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 AGRPO00253 132 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SAP18O00422 153 aaKnown RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 GPR171O14626 319 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TNFSF14O43557 240 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 APOL3O95236 402 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 C1orf105O95561 183 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 MPC2O95563 127 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 C4BPBP20851 252 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 HTR1FP30939 366 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 PRLHRP49683 370 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 MANFP55145 182 aaKnown RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 RPS26P62854 115 aaKnown RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 PUDPQ08623 228 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 RPA4Q13156 261 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 ZNF267Q14586 743 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 MLC1Q15049 377 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SLC36A2Q495M3 483 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 IDNKQ5T6J7 187 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 ZNF322Q6U7Q0 402 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 ASB18Q6ZVZ8 466 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 C16orf62Q7Z3J2 963 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SLC9B2Q86UD5 537 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 RHBDD1Q8TEB9 315 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SLC5A11Q8WWX8 675 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 RAB8BQ92930 207 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 RBPMSQ93062 196 aaKnown RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SECISBP2Q96T21 854 aaKnown RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 DPCDQ9BVM2 203 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 TEX12Q9BXU0 123 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SLAMF7Q9NQ25 335 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 SIRT3Q9NTG7 399 aaPredicted RBP8.92□□□□□ -0.98
HDAC3-205ENST00000469550 NUDT15Q9NV35 164 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 MED9Q9NWA0 146 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 ZNF224Q9NZL3 707 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 MAB21L2Q9Y586 359 aa8.92□□□□□ -0.98
HDAC3-205ENST00000469550 A0A1B0GTQ1 180 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 C2orf92A0A1B0GVN3 265 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 A0A1W2PPC4 97 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 CD8B2A6NJW9 211 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 OR2AG2A6NM03 316 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 RNF13O43567 381 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 TSPAN6O43657 245 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 B4GALT2O60909 372 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 SOX30O94993 753 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 CD8BP10966 210 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 CXCL3P19876 107 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 F8A1P23610 371 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 DNASE1P24855 282 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 PPP2R1BP30154 601 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 THBS2P35442 1172 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 NNMTP40261 264 aa8.91□□□□□ -0.98
HDAC3-205ENST00000469550 VASPP50552 380 aaPredicted RBP8.91□□□□□ -0.98
HDAC3-205ENST00000469550 CCR5P51681 352 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms