RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 CRISP3P54108 245 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 PER3P56645 1201 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 CLDN15P56746 228 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 TXNL4AP83876 142 aaKnown RBP10.53□□□□□ -0.72
CUX1-207ENST00000465461 FADDQ13158 208 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 SKP2Q13309 424 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 QPRTQ15274 297 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 ADRM1Q16186 407 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 TMEM44Q2T9K0 475 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 ACSF3Q4G176 576 aaPredicted RBP10.53□□□□□ -0.72
CUX1-207ENST00000465461 RABL3Q5HYI8 236 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 MRPL2Q5T653 305 aaKnown RBP10.53□□□□□ -0.72
CUX1-207ENST00000465461 NANOGP8Q6NSW7 305 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 ENPP6Q6UWR7 440 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 B3GNT6Q6ZMB0 384 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 ZNF836Q6ZNA1 936 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 EIF3MQ7L2H7 374 aaKnown RBP10.53□□□□□ -0.72
CUX1-207ENST00000465461 PIGWQ7Z7B1 504 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 CCDC71Q8IV32 467 aaPredicted RBP10.53□□□□□ -0.72
CUX1-207ENST00000465461 CLIP4Q8N3C7 705 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 ATP6V1C2Q8NEY4 427 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 OR10Q1Q8NGQ4 319 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 OR5W2Q8NH69 310 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 OR10A6Q8NH74 314 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 FBXO27Q8NI29 283 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 WDR60Q8WVS4 1066 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 LRRC58Q96CX6 371 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 TREX2Q9BQ50 279 aaPredicted RBP10.53□□□□□ -0.72
CUX1-207ENST00000465461 PIGQQ9BRB3 760 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 RSPO3Q9BXY4 272 aaPredicted RBP10.53□□□□□ -0.72
CUX1-207ENST00000465461 MYLK2Q9H1R3 596 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 RAD21L1Q9H4I0 556 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 NANOGQ9H9S0 305 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.53□□□□□ -0.72
CUX1-207ENST00000465461 USP22Q9UPT9 525 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 CHST2Q9Y4C5 530 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 DSPPQ9NZW4 1301 aa10.53□□□□□ -0.72
CUX1-207ENST00000465461 HEATR5AQ86XA9 2040 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 DIDO1Q9BTC0 2240 aaKnown RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 A0A0G2JPF8 293 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 TMEM247A6NEH6 219 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 AHRRA9YTQ3 701 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 HNRNPCL2B2RXH8 293 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 HNRNPCL3B7ZW38 293 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 C5orf58C9J3I9 102 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 FAM47E-STBD1D6RA91 191 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 FXYD1O00168 92 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 AIM2O14862 343 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 HNRNPCL1O60812 293 aaKnown RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 WDR1O75083 606 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 PGM3O95394 542 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 DBIP07108 87 aaKnown RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 GKN3PP0CG01 181 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 HNRNPCL4P0DMR1 293 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 ARAFP10398 606 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 COX4I1P13073 169 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 CPN1P15169 458 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 PRKCAP17252 672 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 PPIBP23284 216 aaKnown RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 PSMA4P25789 261 aaKnown RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 COL8A1P27658 744 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 SHC1P29353 583 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 MAGEA8P43361 318 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 AGFG1P52594 562 aaKnown RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 CDK6Q00534 326 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 CBFBQ13951 182 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 SCARB2Q14108 478 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 MAPRE2Q15555 327 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 TRMT5Q32P41 509 aaKnown RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 GLYR1Q49A26 553 aaPredicted RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 AP1ARQ63HQ0 302 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 POMZP3Q6PJE2 187 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 PTOV1Q86YD1 416 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 PEX5LQ8IYB4 626 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 PM20D2Q8IYS1 436 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 TOR1AIP2Q8NFQ8 470 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 TNIP2Q8NFZ5 429 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 SDCCAG3Q96C92 435 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 ZNF845Q96IR2 970 aaPredicted RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 PSMG3-AS1Q96PY0 264 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 CCT8L2Q96SF2 557 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 UCK2Q9BZX2 261 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 DNAJB12Q9NXW2 375 aaKnown RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 GMPR2Q9P2T1 348 aaKnown RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 RNF6Q9Y252 685 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 ZNF443Q9Y2A4 671 aaPredicted RBP10.52□□□□□ -0.73
CUX1-207ENST00000465461 GMEB1Q9Y692 573 aa10.52□□□□□ -0.73
CUX1-207ENST00000465461 BAHCC1Q9P281 2608 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 A0A087WZY1 265 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 A0A0G2JNJ9 132 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 CLCA1A8K7I4 914 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 BBIP1A8MTZ0 92 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 EIF1AYO14602 144 aaKnown RBP10.51□□□□□ -0.73
CUX1-207ENST00000465461 FRS3O43559 492 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 EPPINO95925 133 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 PABPC4LP0CB38 370 aaKnown RBP10.51□□□□□ -0.73
CUX1-207ENST00000465461 NID1P14543 1247 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 GABRA1P14867 456 aa10.51□□□□□ -0.73
CUX1-207ENST00000465461 ADSLP30566 484 aaPredicted RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms