RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 KRT6CP48668 564 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 PSPHP78330 225 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 PLCXD2Q0VAA5 305 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 CSTF3Q12996 717 aaKnown RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 DYRK1AQ13627 763 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 RASA2Q15283 850 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 TOMM20Q15388 145 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 TRMT12Q53H54 448 aaKnown RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 ZNF678Q5SXM1 525 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ANGPTL8Q6UXH0 198 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 TIFABQ6ZNK6 161 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 SAMD14Q8IZD0 417 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 CNPY4Q8N129 248 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 C1orf52Q8N6N3 182 aaKnown RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 GBP7Q8N8V2 638 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 RELL2Q8NC24 303 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 NOA1Q8NC60 698 aaKnown RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 NAXEQ8NCW5 288 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 TOR1AIP2Q8NFQ8 470 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 TNIP2Q8NFZ5 429 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 OR52R1Q8NGF1 315 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 MBD3L2Q8NHZ7 208 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 ZPLD1Q8TCW7 415 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ZNF675Q8TD23 568 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 RNASE6Q93091 150 aaKnown RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 HGDQ93099 445 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ABTB1Q969K4 478 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 KLHL29Q96CT2 875 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 TMCO6Q96DC7 493 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ERP27Q96DN0 273 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 MTBPQ96DY7 904 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 OMA1Q96E52 524 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 CNRIP1Q96F85 164 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 WDYHV1Q96HA8 205 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ZNF681Q96N22 645 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ZNF382Q96SR6 550 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 SH3GL2Q99962 352 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 VRK1Q99986 396 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 OSBPL11Q9BXB4 747 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ITPAQ9BY32 194 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 UGT2B28Q9BY64 529 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 POLDIP3Q9BY77 421 aaKnown RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 CALHM2Q9HA72 323 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 RASSF1Q9NS23 344 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 UTS2RQ9UKP6 389 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 EXO1Q9UQ84 846 aaKnown RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 CAMK2AQ9UQM7 478 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 STK38LQ9Y2H1 464 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 PLLPQ9Y342 182 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 SLC6A5Q9Y345 797 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ABCA2Q9BZC7 2435 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 MAP1AP78559 2803 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 ZNF407Q9C0G0 2248 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 EML6Q6ZMW3 1958 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 CCDC151A5D8V7 595 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 OR6C70A6NIJ9 312 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 MANBAO00462 879 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 UGT2B11O75310 529 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 CBR3O75828 277 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 ABHD2P08910 425 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 CTAGE8P0CG41 777 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 CD99P14209 185 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 CPN1P15169 458 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 IMPDH1P20839 514 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 HMOX2P30519 316 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 OPRM1P35372 400 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 GCKP35557 465 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 PTGDSP41222 190 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 GSTM5P46439 218 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 ALDH9A1P49189 494 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 EMDP50402 254 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 ZNF136P52737 540 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 IST1P53990 364 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 NAGLUP54802 743 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 RCAN2Q14206 197 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 HEPACAMQ14CZ8 416 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 EXOSC7Q15024 291 aaKnown RBP6.57□□□□□ -1.36
USP54-208ENST00000461520 CEBPEQ15744 281 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 NNATQ16517 81 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 EIPR1Q53HC9 387 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 UNC50Q53HI1 259 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 SPIN4Q56A73 249 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 ZNF628Q5EBL2 1059 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 TEX35Q5T0J7 233 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 SCIMPQ6UWF3 145 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 PEG10Q86TG7 708 aaKnown RBP6.57□□□□□ -1.36
USP54-208ENST00000461520 YRDCQ86U90 279 aaKnown RBP6.57□□□□□ -1.36
USP54-208ENST00000461520 SLC22A9Q8IVM8 553 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 CTAGE4Q8IX94 777 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 ADGRG5Q8IZF4 528 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 MMP21Q8N119 569 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 FAM83FQ8NEG4 500 aaPredicted RBP6.57□□□□□ -1.36
USP54-208ENST00000461520 METTL6Q8TCB7 284 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 FAM222BQ8WU58 562 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 NRGNQ92686 78 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 DTNBP1Q96EV8 351 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 SLC35A4Q96G79 324 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 BTBD9Q96Q07 612 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 TMEM237Q96Q45 408 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 TRIB1Q96RU8 372 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms