RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 NID1P14543 1247 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 CPN1P15169 458 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 LHX2P50458 406 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 ZNF41P51814 821 aaPredicted RBP25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 RAET1LQ5VY80 246 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 REEP3Q6NUK4 255 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 ENPP6Q6UWR7 440 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 NET1Q7Z628 596 aaPredicted RBP25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 PTOV1Q86YD1 416 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 PM20D2Q8IYS1 436 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 OR5M1Q8NGP8 315 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 OR52P1PQ8NH57 321 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 BBS10Q8TAM1 723 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 ZBTB8AQ96BR9 441 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 CMTM5Q96DZ9 223 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 DMRTA2Q96SC8 542 aa25.32■■□□□ 1.64
SMARCC1-203ENST00000454240 FIGNL2A6NMB9 653 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 WDR1O75083 606 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 LDLRP01130 860 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 PRDX6P30041 224 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 STARP49675 285 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 GZMMP51124 257 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 GKAP1Q5VSY0 366 aaPredicted RBP25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 SERPINA11Q86U17 422 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 ULK2Q8IYT8 1036 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 EID3Q8N140 333 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 GTPBP8Q8N3Z3 284 aaPredicted RBP25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 NPAS1Q99742 590 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 EXOSC3Q9NQT5 275 aaKnown RBP25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 ZNF337Q9Y3M9 751 aa25.31■■□□□ 1.64
SMARCC1-203ENST00000454240 NCOA6Q14686 2063 aaPredicted RBP25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 AHRRA9YTQ3 701 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 SHISA8B8ZZ34 492 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 FAM47E-STBD1D6RA91 191 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 DCTN3O75935 186 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 NUDT14O95848 222 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 THBS1P07996 1170 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 HOXD4P09016 255 aaPredicted RBP25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 ESRRAP11474 423 aaPredicted RBP25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 GABRA1P14867 456 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 ETS2P15036 469 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 ZNF17P17021 662 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 SLC6A2P23975 617 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 PSMA4P25789 261 aaKnown RBP25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 ACVR2AP27037 513 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 RBBP4Q09028 425 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 CBFBQ13951 182 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 SCARB2Q14108 478 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 TOMM34Q15785 309 aaPredicted RBP25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 BCL2A1Q16548 175 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 RABL3Q5HYI8 236 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 VRK2Q86Y07 508 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 TMCO5AQ8N6Q1 288 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 OR10A6Q8NH74 314 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 POC1BQ8TC44 478 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 CNOT9Q92600 299 aaKnown RBP25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 ZNF524Q96C55 264 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 LRRC37BQ96QE4 947 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 EFCAB1Q9HAE3 211 aa25.3■■□□□ 1.64
SMARCC1-203ENST00000454240 USP9XQ93008 2570 aaPredicted RBP25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 AIM2O14862 343 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 CYP7B1O75881 506 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 PER3P56645 1201 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 CYP51A1Q16850 503 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 LIN52Q52LA3 116 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 MRPL2Q5T653 305 aaKnown RBP25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 RTL6Q6ICC9 239 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 MTFR2Q6P444 385 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 C11orf65Q8NCR3 313 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 HIPK4Q8NE63 616 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 PHF10Q8WUB8 498 aaKnown RBP25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 CCDC120Q96HB5 630 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 GPATCH1Q9BRR8 931 aaKnown RBP25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 DNAJB12Q9NXW2 375 aaKnown RBP25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 ALKBH4Q9NXW9 302 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 ZNF232Q9UNY5 417 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 CAMK2AQ9UQM7 478 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 ZNF443Q9Y2A4 671 aaPredicted RBP25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 IFT52Q9Y366 437 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 FAM215AQ9Y5M1 114 aa25.29■■□□□ 1.64
SMARCC1-203ENST00000454240 ETV2O00321 342 aaPredicted RBP25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 PABPC4LP0CB38 370 aaKnown RBP25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 PEPDP12955 493 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 ZNF708P17019 499 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 PTGER4P35408 488 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 EIF1P41567 113 aaKnown RBP25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 CLDN18P56856 261 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 EEF1A1P68104 462 aaKnown RBP25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 LARS2Q15031 903 aaKnown RBP25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 RNF220Q5VTB9 566 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 ZNF836Q6ZNA1 936 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 CALHM3Q86XJ0 350 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 ZZZ3Q8IYH5 903 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 RPRMLQ8N4K4 120 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 SSC4DQ8WTU2 575 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 SPATA9Q9BWV2 254 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 CHST2Q9Y4C5 530 aa25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 GPC6Q9Y625 555 aaPredicted RBP25.28■■□□□ 1.64
SMARCC1-203ENST00000454240 CDHR4A6H8M9 788 aa25.27■■□□□ 1.64
SMARCC1-203ENST00000454240 RNF224P0DH78 156 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms