RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PLAURQ03405 335 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 FLOT2Q14254 428 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 CBLN3Q6UW01 205 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 FKBP9P1Q75LS8 142 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 SLC22A16Q86VW1 577 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 LSM14AQ8ND56 463 aaKnown RBP14.37□□□□□ -0.11
USP40-206ENST00000443711 UTP4Q969X6 686 aaKnown RBP14.37□□□□□ -0.11
USP40-206ENST00000443711 ARSGQ96EG1 525 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 TTTY12Q9BZ98 90 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 PRDM4Q9UKN5 801 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 SLC9A8Q9Y2E8 581 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 C15orf41Q9Y2V0 281 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 HRH3Q9Y5N1 445 aa14.37□□□□□ -0.11
USP40-206ENST00000443711 CFAP73A6NFT4 308 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 TMEM229AB2RXF0 380 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 FAM47E-STBD1D6RA91 191 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 GMFGO60234 142 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 PRKD3O94806 890 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 GLSO94925 669 aaPredicted RBP14.36□□□□□ -0.11
USP40-206ENST00000443711 NUDT14O95848 222 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 EPPINO95925 133 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 CRYABP02511 175 aaKnown RBP14.36□□□□□ -0.11
USP40-206ENST00000443711 LINGO3P0C6S8 592 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 UQCRBP14927 111 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 NQO1P15559 274 aaKnown RBP14.36□□□□□ -0.11
USP40-206ENST00000443711 PGCP20142 388 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 GDF1P27539 372 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 RYKP34925 604 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 RFC3P40938 356 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 CCR4P51679 360 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 DSCR4P56555 118 aaPredicted RBP14.36□□□□□ -0.11
USP40-206ENST00000443711 RGS8P57771 180 aaPredicted RBP14.36□□□□□ -0.11
USP40-206ENST00000443711 PPIAP62937 165 aaKnown RBP14.36□□□□□ -0.11
USP40-206ENST00000443711 PMP22Q01453 160 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 CBFBQ13951 182 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 NRF1Q16656 503 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 IFI44LQ53G44 452 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 COMTD1Q86VU5 262 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 GPR119Q8TDV5 335 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 PYURFQ96I23 114 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 HSH2DQ96JZ2 352 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 ARHGDIGQ99819 225 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 QPCTLQ9NXS2 382 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 LUZP4Q9P127 313 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 FBXL2Q9UKC9 423 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 SH3GLB1Q9Y371 365 aa14.36□□□□□ -0.11
USP40-206ENST00000443711 NCKAP5O14513 1909 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 AQP12BA6NM10 295 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 FAM166BA8MTA8 275 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 FRS3O43559 492 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 RFPL3SP0C7P2 107 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 GKN3PP0CG01 181 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 ZNF24P17028 368 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 DPP4P27487 766 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 ZNF41P51814 821 aaPredicted RBP14.35□□□□□ -0.11
USP40-206ENST00000443711 EPS8Q12929 822 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 GANABQ14697 944 aaKnown RBP14.35□□□□□ -0.11
USP40-206ENST00000443711 TOMM20Q15388 145 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 C1orf146Q5VVC0 180 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 ENPP6Q6UWR7 440 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 VTCN1Q7Z7D3 282 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 CARM1Q86X55 608 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 AQP12AQ8IXF9 295 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 FAM109AQ8N4B1 249 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 TMEM251Q8N6I4 163 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 Q8NA96 180 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 OR10Q1Q8NGQ4 319 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 GEMIN6Q8WXD5 167 aaKnown RBP14.35□□□□□ -0.11
USP40-206ENST00000443711 C1GALT1C1Q96EU7 318 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 TAAR6Q96RI8 345 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 UGT2B28Q9BY64 529 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 UBQLN3Q9H347 655 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 ZNF703Q9H7S9 590 aaPredicted RBP14.35□□□□□ -0.11
USP40-206ENST00000443711 DKKL1Q9UK85 242 aa14.35□□□□□ -0.11
USP40-206ENST00000443711 MRPS18CQ9Y3D5 142 aaKnown RBP14.35□□□□□ -0.11
USP40-206ENST00000443711 A0A087WZY1 265 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 TCRBV5S2A0A599 114 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 B4DXG7 233 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 M0R3H8 397 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 FAAHO00519 579 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 TFECO14948 347 aaPredicted RBP14.34□□□□□ -0.11
USP40-206ENST00000443711 CDC40O60508 579 aaKnown RBP eCLIP14.34□□□□□ -0.11
USP40-206ENST00000443711 TRAPPC6AO75865 159 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 PRG2P13727 222 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 HK1P19367 917 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 SRD5A2P31213 254 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 ACAA2P42765 397 aaKnown RBP14.34□□□□□ -0.11
USP40-206ENST00000443711 COPZ1P61923 177 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 ALDH6A1Q02252 535 aaKnown RBP14.34□□□□□ -0.11
USP40-206ENST00000443711 KCNC4Q03721 635 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 RNFT1Q5M7Z0 435 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 FAM180AQ6UWF9 173 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 RANBP3LQ86VV4 465 aaPredicted RBP14.34□□□□□ -0.11
USP40-206ENST00000443711 SPATA24Q86W54 205 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 ZNF563Q8TA94 476 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 VANGL1Q8TAA9 524 aaPredicted RBP14.34□□□□□ -0.11
USP40-206ENST00000443711 TMEM234Q8WY98 164 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 SLC39A7Q92504 469 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 ZNF559Q9BR84 538 aa14.34□□□□□ -0.11
USP40-206ENST00000443711 TAS2R10Q9NYW0 307 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms