RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 KDELR2P33947 212 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 PIGAP37287 484 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 GPR85P60893 370 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.09□□□□□ -0.63
PTPRF-208ENST00000437607 CYP27C1Q4G0S4 372 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 FLYWCH1Q4VC44 716 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 CT45A2Q5DJT8 189 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 ZFP1Q6P2D0 407 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 FRRS1Q6ZNA5 592 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 C16orf47Q6ZP98 133 aaPredicted RBP11.09□□□□□ -0.63
PTPRF-208ENST00000437607 CCDC80Q76M96 950 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 ARMC8Q8IUR7 673 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 PEX5LQ8IYB4 626 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 CYP4Z2PQ8N1L4 340 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 ZNF619Q8N2I2 560 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 ZNF441Q8N8Z8 693 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 GOLM1Q8NBJ4 401 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 OR52E4Q8NGH9 312 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 LILRB4Q8NHJ6 448 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 SPPL2AQ8TCT8 520 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 RASSF5Q8WWW0 418 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 ADIPOR1Q96A54 375 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 SLC38A1Q9H2H9 487 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 BCL2L10Q9HD36 194 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 DEPPQ9NTK1 212 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 SLC13A4Q9UKG4 626 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 DSPPQ9NZW4 1301 aa11.09□□□□□ -0.63
PTPRF-208ENST00000437607 ANKHD1Q8IWZ3 2542 aaKnown RBP11.08□□□□□ -0.64
PTPRF-208ENST00000437607 TCRBV3S1A0A5B6 114 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 PRAMEF27A3QJZ7 478 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 FAM90A27PA6NNH2 459 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 KLRC4-KLRK1H3BQV0 150 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 TO15178 435 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 ENTPD5O75356 428 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 MSX1P28360 303 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 GPR68Q15743 365 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 KRTAP21-3Q3LHN1 58 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 LIN52Q52LA3 116 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 FAM98BQ52LJ0 330 aaKnown RBP11.08□□□□□ -0.64
PTPRF-208ENST00000437607 EIPR1Q53HC9 387 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 CYBRD1Q53TN4 286 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 EIF3MQ7L2H7 374 aaKnown RBP11.08□□□□□ -0.64
PTPRF-208ENST00000437607 OLIG3Q7RTU3 272 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 CCDC71Q8IV32 467 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-208ENST00000437607 DMRTC2Q8IXT2 367 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-208ENST00000437607 PRR22Q8IZ63 422 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 ZNF614Q8N883 585 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 OR4N2Q8NGD1 307 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 NRGNQ92686 78 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 TMBIM1Q969X1 311 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 TP53INP1Q96A56 240 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 TAMM41Q96BW9 452 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 OMA1Q96E52 524 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 SLC47A1Q96FL8 570 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 HSH2DQ96JZ2 352 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 SDF2Q99470 211 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 UGT2B28Q9BY64 529 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 DCAF13Q9NV06 445 aaKnown RBP11.08□□□□□ -0.64
PTPRF-208ENST00000437607 MKLN1Q9UL63 735 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 AURKCQ9UQB9 309 aa11.08□□□□□ -0.64
PTPRF-208ENST00000437607 GPC6Q9Y625 555 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-208ENST00000437607 ABCA4P78363 2273 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 A0A0G2JMM0 328 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 A0A1W2PPB8 328 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 A0A1W2PRS3 328 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 TCRBV5S2A0A599 114 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 KIR3DP1A8MWS1 328 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 WWP2O00308 870 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 ABCB7O75027 752 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 FKBP6O75344 327 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 REM1O75628 298 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 IL33O95760 270 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 UMPSP11172 480 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 HOXB6P17509 224 aaKnown RBP11.07□□□□□ -0.64
PTPRF-208ENST00000437607 CHRNB4P30926 498 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 LCN1P31025 176 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 NUP107P57740 925 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 CHRNEQ04844 493 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 CHRNB3Q05901 458 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 LARS2Q15031 903 aaKnown RBP11.07□□□□□ -0.64
PTPRF-208ENST00000437607 MAPK11Q15759 364 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 TMEM211Q6ICI0 200 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 TYW3Q6IPR3 259 aaKnown RBP11.07□□□□□ -0.64
PTPRF-208ENST00000437607 FKBP9P1Q75LS8 142 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 CBLL1Q75N03 491 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 ZNF527Q8NB42 609 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 ASB5Q8WWX0 329 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 PYDC1Q8WXC3 89 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 PROX1Q92786 737 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 PMM1Q92871 262 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 EFHD2Q96C19 240 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-208ENST00000437607 TPD52L3Q96J77 140 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 DOCK7Q96N67 2140 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 DEFB127Q9H1M4 99 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 TP63Q9H3D4 680 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-208ENST00000437607 LIN28AQ9H9Z2 209 aaKnown RBP11.07□□□□□ -0.64
PTPRF-208ENST00000437607 BAG5Q9UL15 447 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 ZNF443Q9Y2A4 671 aaPredicted RBP11.07□□□□□ -0.64
PTPRF-208ENST00000437607 IFT52Q9Y366 437 aa11.07□□□□□ -0.64
PTPRF-208ENST00000437607 NPIPA5A0A0B4J1W7 369 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms