RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PACSIN3Q9UKS6 424 aa17.1■□□□□ 0.33
SF3A1-202ENST00000411423 ZNF175Q9Y473 711 aa17.1■□□□□ 0.33
SF3A1-202ENST00000411423 USH1CQ9Y6N9 552 aa17.1■□□□□ 0.33
SF3A1-202ENST00000411423 CCDC154A6NI56 674 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 DUXAA6NLW8 204 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 HMGN4O00479 90 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 ADAMDEC1O15204 470 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 KIAA0513O60268 411 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 STX11O75558 287 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 SOX30O94993 753 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 NTN1O95631 604 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 PRKCAP17252 672 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 CAPN3P20807 821 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 RNF130Q86XS8 419 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 CNEP1R1Q8N9A8 125 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 VPS37AQ8NEZ2 397 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 RFWD2Q8NHY2 731 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 ROPN1LQ96C74 230 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 QRSL1Q9H0R6 528 aaKnown RBP17.09■□□□□ 0.33
SF3A1-202ENST00000411423 ACBD3Q9H3P7 528 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 PIGMQ9H3S5 423 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 ITGB1BP2Q9UKP3 347 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 CLEC4AQ9UMR7 237 aa17.09■□□□□ 0.33
SF3A1-202ENST00000411423 CELSR1Q9NYQ6 3014 aa17.08■□□□□ 0.33
SF3A1-202ENST00000411423 HEATR5AQ86XA9 2040 aa17.08■□□□□ 0.33
SF3A1-202ENST00000411423 CLDN24A6NM45 220 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 A6NNC1 897 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 ENO4A6NNW6 628 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 GTPBP1O00178 669 aaKnown RBP17.08■□□□□ 0.32
SF3A1-202ENST00000411423 ZNF264O43296 627 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SMNDC1O75940 238 aaKnown RBP eCLIP17.08■□□□□ 0.32
SF3A1-202ENST00000411423 AK1P00568 194 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 UBL4AP11441 157 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 H2AFXP16104 143 aaPredicted RBP17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SFTPDP35247 375 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 CHI3L1P36222 383 aaPredicted RBP17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SUMO3P55854 103 aaPredicted RBP17.08■□□□□ 0.32
SF3A1-202ENST00000411423 RPS3AP61247 264 aaKnown RBP17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SORDQ00796 357 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 FAM27E3Q08E93 113 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SKP2Q13309 424 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 MAPK11Q15759 364 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SYPL1Q16563 259 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SGCBQ16585 318 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 GTDC1Q4AE62 458 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 AP1ARQ63HQ0 302 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 OR2A2Q6IF42 318 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 EPGNQ6UW88 154 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 C16orf62Q7Z3J2 963 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 LILRA2Q8N149 483 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 ANKFN1Q8N957 763 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 OR2V1Q8NHB1 315 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 PNPT1Q8TCS8 783 aaKnown RBP17.08■□□□□ 0.32
SF3A1-202ENST00000411423 FAM222BQ8WU58 562 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 PANX1Q96RD7 426 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SRXN1Q9BYN0 137 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SAP130Q9H0E3 1048 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SLC24A3Q9HC58 644 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 HHATLQ9HCP6 504 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 SDR39U1Q9NRG7 319 aaPredicted RBP17.08■□□□□ 0.32
SF3A1-202ENST00000411423 RASSF1Q9NS23 344 aa17.08■□□□□ 0.32
SF3A1-202ENST00000411423 DNAJB12Q9NXW2 375 aaKnown RBP17.08■□□□□ 0.32
SF3A1-202ENST00000411423 TUBAL3A6NHL2 446 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 H3BNH8 94 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 DIAPH2O60879 1101 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 DNAJA2O60884 412 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 ADAM11O75078 769 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 SLC22A3O75751 556 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 NUDT14O95848 222 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 CRHP06850 196 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 CHRM4P08173 479 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 IDO1P14902 403 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 CD1EP15812 388 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 CCKARP32238 428 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 CPOXP36551 454 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 PGM1P36871 562 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 CPA2P48052 419 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 KHKP50053 298 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 MVDP53602 400 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 CHRNEQ04844 493 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 QPRTQ15274 297 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 TESK1Q15569 626 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 PPP4R4Q6NUP7 873 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 DNAJC14Q6Y2X3 702 aaPredicted RBP17.07■□□□□ 0.32
SF3A1-202ENST00000411423 ZNF621Q6ZSS3 439 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 ZNF610Q8N9Z0 462 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 FAM71CQ8NEG0 241 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 OR5W2Q8NH69 310 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 LRRC46Q96FV0 321 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 KLHL15Q96M94 604 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 C7orf26Q96N11 449 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 EBF4Q9BQW3 602 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 THUMPD3Q9BV44 507 aaKnown RBP17.07■□□□□ 0.32
SF3A1-202ENST00000411423 COQ10BQ9H8M1 238 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 EXD2Q9NVH0 621 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 WDR45Q9Y484 360 aa17.07■□□□□ 0.32
SF3A1-202ENST00000411423 ETV2O00321 342 aaPredicted RBP17.06■□□□□ 0.32
SF3A1-202ENST00000411423 MSTNO14793 375 aa17.06■□□□□ 0.32
SF3A1-202ENST00000411423 EIF4E2O60573 245 aaKnown RBP17.06■□□□□ 0.32
SF3A1-202ENST00000411423 CYP7B1O75881 506 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms