RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 GIMAP5Q96F15 307 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 COL21A1Q96P44 957 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 NIPSNAP1Q9BPW8 284 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 NAA50Q9GZZ1 169 aaKnown RBP12.36□□□□□ -0.43
LIMS1-204ENST00000409441 EQTNQ9NQ60 294 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 RLIMQ9NVW2 624 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 ENPP5Q9UJA9 477 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 MGAT4BQ9UQ53 548 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 HEMK1Q9Y5R4 338 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-204ENST00000409441 ANKRD11Q6UB99 2663 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-204ENST00000409441 PRAMEF27A3QJZ7 478 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 TMEM200CA6NKL6 621 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 MPZL2O60487 215 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 H1F0P07305 194 aaKnown RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 ACVR2AP27037 513 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 GP2P55259 537 aaKnown RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 DCTN2Q13561 401 aaKnown RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 EBPQ15125 230 aaKnown RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 CYP27C1Q4G0S4 372 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 SYT6Q5T7P8 510 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 HLA-DQA1Q5Y7H0 255 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 ZNF770Q6IQ21 691 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 TCTN3Q6NUS6 607 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 H3F3CQ6NXT2 135 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 ZCCHC12Q6PEW1 402 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 WDR53Q7Z5U6 358 aaPredicted RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 LINC00471Q8N535 108 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 AQP11Q8NBQ7 271 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 OR9Q2Q8NGE9 314 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 FAM81AQ8TBF8 368 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 BRIX1Q8TDN6 353 aaKnown RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 SNRNP27Q8WVK2 155 aaKnown RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 PSMF1Q92530 271 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 NR4A3Q92570 626 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 FCGR1BQ92637 280 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 ADIPOR1Q96A54 375 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 VSTM2LQ96N03 204 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 MS4A4EQ96PG1 132 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 GAL3ST4Q96RP7 486 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 YIPF4Q9BSR8 244 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 FUNDC2Q9BWH2 189 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 DGCR6LQ9BY27 220 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 WWTR1Q9GZV5 400 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 FOLH1BQ9HBA9 442 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 CALML5Q9NZT1 146 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 WARS2Q9UGM6 360 aaKnown RBP12.35□□□□□ -0.43
LIMS1-204ENST00000409441 LIPT1Q9Y234 373 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 DTX4Q9Y2E6 619 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 SLC9A8Q9Y2E8 581 aa12.35□□□□□ -0.43
LIMS1-204ENST00000409441 A0A1W2PPW3 197 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 FFAR1O14842 300 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 MT-ND2P03891 347 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 DRD5P21918 477 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 PPICP45877 212 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 GANABQ14697 944 aaKnown RBP12.34□□□□□ -0.43
LIMS1-204ENST00000409441 LASP1Q14847 261 aaKnown RBP12.34□□□□□ -0.43
LIMS1-204ENST00000409441 DCST1Q5T197 706 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 FCRLBQ6BAA4 426 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 MFSD12Q6NUT3 480 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 C16orf47Q6ZP98 133 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-204ENST00000409441 RPS19BP1Q86WX3 136 aaKnown RBP12.34□□□□□ -0.43
LIMS1-204ENST00000409441 SIRT6Q8N6T7 355 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 CDRT4Q8N9R6 151 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 SLC16A11Q8NCK7 471 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 OR5D16Q8NGK9 328 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 NUBPLQ8TB37 319 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 MYDGFQ969H8 173 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 DCUN1D5Q9BTE7 237 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 PINK1Q9BXM7 581 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 ITPAQ9BY32 194 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 ACTRT3Q9BYD9 372 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 CDCP1Q9H5V8 836 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 OCEL1Q9H607 264 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 NMNAT1Q9HAN9 279 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-204ENST00000409441 RASSF1Q9NS23 344 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 FKBP14Q9NWM8 211 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 MYOTQ9UBF9 498 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 GPR55Q9Y2T6 319 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-204ENST00000409441 DSPPQ9NZW4 1301 aa12.34□□□□□ -0.43
LIMS1-204ENST00000409441 ZFHX4Q86UP3 3567 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 ZAR1LA6NP61 321 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 WWP2O00308 870 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 SYT5O00445 386 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 INMTO95050 263 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 AGR2O95994 175 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 BCL10O95999 233 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 CT45A8P0DMV1 189 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 CT45A9P0DMV2 189 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 GABRB1P18505 474 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 ELAVL4P26378 380 aaKnown RBP12.33□□□□□ -0.43
LIMS1-204ENST00000409441 GABRA3P34903 492 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 MAP3K8P41279 467 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 CDC42P60953 191 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 DCAF7P61962 342 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 ZNF155Q12901 538 aaPredicted RBP12.33□□□□□ -0.43
LIMS1-204ENST00000409441 ZNHIT3Q15649 155 aaPredicted RBP12.33□□□□□ -0.43
LIMS1-204ENST00000409441 SMN1Q16637 294 aaKnown RBP12.33□□□□□ -0.43
LIMS1-204ENST00000409441 CT45A2Q5DJT8 189 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 FGD3Q5JSP0 725 aa12.33□□□□□ -0.43
LIMS1-204ENST00000409441 B3GNTL1Q67FW5 361 aaPredicted RBP12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms