RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 NME2P1O60361 137 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 CDC40O60508 579 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS53-203ENST00000401468 REM1O75628 298 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 UGT2B17O75795 530 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 RGS9O75916 674 aaPredicted RBP8.38□□□□□ -1.07
VPS53-203ENST00000401468 PGM3O95394 542 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 UTS2O95399 124 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 CCL3P10147 92 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 NME2P22392 152 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 HTR1EP28566 365 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 IL12BP29460 328 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 EVI2BP34910 448 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 GSK3BP49841 420 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 CRYBA2P53672 197 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 CRISP3P54108 245 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ATP12AP54707 1039 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 CDK6Q00534 326 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ALDH6A1Q02252 535 aaKnown RBP8.38□□□□□ -1.07
VPS53-203ENST00000401468 PLAURQ03405 335 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 LIPEQ05469 1076 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 GRAMD1BQ3KR37 738 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 SAMD4BQ5PRF9 694 aaKnown RBP8.38□□□□□ -1.07
VPS53-203ENST00000401468 CCNJQ5T5M9 372 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 REEP3Q6NUK4 255 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 RPUSD3Q6P087 351 aaKnown RBP8.38□□□□□ -1.07
VPS53-203ENST00000401468 PGM2L1Q6PCE3 622 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 IL20RBQ6UXL0 311 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 APOOLQ6UXV4 268 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ASRGL1Q7L266 308 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 C16orf62Q7Z3J2 963 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 MDGA2Q7Z553 956 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 PRR22Q8IZ63 422 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 DEFB107AQ8IZN7 70 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ZNF619Q8N2I2 560 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ANKFN1Q8N957 763 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 POGLUT1Q8NBL1 392 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 PSD4Q8NDX1 1056 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 HIPK4Q8NE63 616 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 OR10G3Q8NGC4 313 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 OR52E4Q8NGH9 312 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 OR4C3Q8NH37 302 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ITLN2Q8WWU7 325 aaPredicted RBP8.38□□□□□ -1.07
VPS53-203ENST00000401468 MAL2Q969L2 176 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 EFHD2Q96C19 240 aaPredicted RBP8.38□□□□□ -1.07
VPS53-203ENST00000401468 TMCO6Q96DC7 493 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 NODALQ96S42 347 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ADOQ96SZ5 270 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ECSITQ9BQ95 431 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 BTBD10Q9BSF8 475 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 ANGPTL4Q9BY76 406 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 HOXD1Q9GZZ0 328 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 LRMDAQ9H2I8 198 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 MTHFD2LQ9H903 347 aaPredicted RBP8.38□□□□□ -1.07
VPS53-203ENST00000401468 UBQLN4Q9NRR5 601 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 TNFRSF10DQ9UBN6 386 aa8.38□□□□□ -1.07
VPS53-203ENST00000401468 F8P00451 2351 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 AKAP6Q13023 2319 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 HRNRQ86YZ3 2850 aaPredicted RBP8.37□□□□□ -1.07
VPS53-203ENST00000401468 ELOVL7A1L3X0 281 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 PINLYPA6NC86 204 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 FAM166BA8MTA8 275 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 B4DXG7 233 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 ICOSLGO75144 302 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 TRIM3O75382 744 aaPredicted RBP8.37□□□□□ -1.07
VPS53-203ENST00000401468 SLC25A12O75746 678 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 OXSR1O95747 527 aaPredicted RBP8.37□□□□□ -1.07
VPS53-203ENST00000401468 BCHEP06276 602 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 SP1P08047 785 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 STSP08842 583 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 NR2F1P10589 423 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 KRT20P35900 424 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 CASP3P42574 277 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 RASSF2P50749 326 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 NCALDP61601 193 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 RPP38P78345 283 aaKnown RBP8.37□□□□□ -1.07
VPS53-203ENST00000401468 ADORA2A-AS1P86434 159 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 CHRNEQ04844 493 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 FOXO1Q12778 655 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 CEACAM7Q14002 265 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 SCARB2Q14108 478 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 INAQ16352 499 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 MAPK14Q16539 360 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 CYP51A1Q16850 503 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 HYAL4Q2M3T9 481 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 DNAL1Q4LDG9 190 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 FLYWCH1Q4VC44 716 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 RNF220Q5VTB9 566 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 SLC22A10Q63ZE4 541 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 SP5Q6BEB4 398 aaPredicted RBP8.37□□□□□ -1.07
VPS53-203ENST00000401468 SLC30A6Q6NXT4 461 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 FGD2Q7Z6J4 655 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 MRGPRGQ86SM5 289 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 GRAMD2AQ8IUY3 354 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 MICU2Q8IYU8 434 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 OR2T12Q8NG77 320 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 NFKBIDQ8NI38 313 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 BBS10Q8TAM1 723 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 SLC35B4Q969S0 331 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 ZG16BQ96DA0 208 aa8.37□□□□□ -1.07
VPS53-203ENST00000401468 TMEM41AQ96HV5 264 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms