RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ZNF791Q3KP31 576 aaPredicted RBP13.01□□□□□ -0.33
SKA1-202ENST00000398452 LYPD8Q6UX82 237 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 RRM2BQ7LG56 351 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 AMIGO2Q86SJ2 522 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 OR6T1Q8NGN1 323 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 B4GALNT2Q8NHY0 566 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 PHF10Q8WUB8 498 aaKnown RBP13.01□□□□□ -0.33
SKA1-202ENST00000398452 TM9SF4Q92544 642 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 CNOT9Q92600 299 aaKnown RBP13.01□□□□□ -0.33
SKA1-202ENST00000398452 EME1Q96AY2 570 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 SH3YL1Q96HL8 342 aaPredicted RBP13.01□□□□□ -0.33
SKA1-202ENST00000398452 UBL7Q96S82 380 aaPredicted RBP13.01□□□□□ -0.33
SKA1-202ENST00000398452 LAT2Q9GZY6 243 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 SEMA6AQ9H2E6 1030 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 PTGES2Q9H7Z7 377 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 EXOSC3Q9NQT5 275 aaKnown RBP13.01□□□□□ -0.33
SKA1-202ENST00000398452 AGPAT4Q9NRZ5 378 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 SACM1LQ9NTJ5 587 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 DNAJB12Q9NXW2 375 aaKnown RBP13.01□□□□□ -0.33
SKA1-202ENST00000398452 FLRT3Q9NZU0 649 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 NDUFAF4Q9P032 175 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 LRFN1Q9P244 771 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 CARD8Q9Y2G2 431 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 SAMHD1Q9Y3Z3 626 aaKnown RBP13.01□□□□□ -0.33
SKA1-202ENST00000398452 TESMINQ9Y4I5 508 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 CPSF4LA6NMK7 179 aaKnown RBP13□□□□□ -0.33
SKA1-202ENST00000398452 TNFRSF11BO00300 401 aa13□□□□□ -0.33
SKA1-202ENST00000398452 ZNF354AO60765 605 aaPredicted RBP13□□□□□ -0.33
SKA1-202ENST00000398452 FMO6PO60774 539 aa13□□□□□ -0.33
SKA1-202ENST00000398452 DIRAS1O95057 198 aa13□□□□□ -0.33
SKA1-202ENST00000398452 SNX4O95219 450 aa13□□□□□ -0.33
SKA1-202ENST00000398452 GADD45GO95257 159 aa13□□□□□ -0.33
SKA1-202ENST00000398452 H1F0P07305 194 aaKnown RBP13□□□□□ -0.33
SKA1-202ENST00000398452 GKN3PP0CG01 181 aa13□□□□□ -0.33
SKA1-202ENST00000398452 WT1P19544 449 aaPredicted RBP13□□□□□ -0.33
SKA1-202ENST00000398452 PGCP20142 388 aa13□□□□□ -0.33
SKA1-202ENST00000398452 MSX1P28360 303 aa13□□□□□ -0.33
SKA1-202ENST00000398452 RRM2P31350 389 aa13□□□□□ -0.33
SKA1-202ENST00000398452 RYKP34925 604 aa13□□□□□ -0.33
SKA1-202ENST00000398452 CDH12P55289 794 aa13□□□□□ -0.33
SKA1-202ENST00000398452 TMPRSS3P57727 454 aa13□□□□□ -0.33
SKA1-202ENST00000398452 ST3GAL3Q11203 375 aa13□□□□□ -0.33
SKA1-202ENST00000398452 GANABQ14697 944 aaKnown RBP13□□□□□ -0.33
SKA1-202ENST00000398452 ZDHHC13Q8IUH4 622 aa13□□□□□ -0.33
SKA1-202ENST00000398452 CADM2Q8N3J6 435 aa13□□□□□ -0.33
SKA1-202ENST00000398452 OR4K17Q8NGC6 315 aa13□□□□□ -0.33
SKA1-202ENST00000398452 GRHL3Q8TE85 626 aa13□□□□□ -0.33
SKA1-202ENST00000398452 DUSP19Q8WTR2 217 aa13□□□□□ -0.33
SKA1-202ENST00000398452 APOBEC4Q8WW27 367 aaKnown RBP13□□□□□ -0.33
SKA1-202ENST00000398452 PSMF1Q92530 271 aa13□□□□□ -0.33
SKA1-202ENST00000398452 C7orf34Q96L11 122 aa13□□□□□ -0.33
SKA1-202ENST00000398452 C5orf34Q96MH7 638 aa13□□□□□ -0.33
SKA1-202ENST00000398452 C9orf16Q9BUW7 83 aa13□□□□□ -0.33
SKA1-202ENST00000398452 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13□□□□□ -0.33
SKA1-202ENST00000398452 KRCC1Q9NPI7 259 aaPredicted RBP13□□□□□ -0.33
SKA1-202ENST00000398452 ANKRD10Q9NXR5 420 aa13□□□□□ -0.33
SKA1-202ENST00000398452 LOC400499M0QZD8 3231 aa13□□□□□ -0.33
SKA1-202ENST00000398452 OR5H15A6NDH6 313 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 TMEM229AB2RXF0 380 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 MAN1A2O60476 641 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 OR5F1O95221 314 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 CD46P15529 392 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 DNAJA1P31689 397 aaKnown RBP12.99□□□□□ -0.33
SKA1-202ENST00000398452 CASP3P42574 277 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 P2RX1P51575 399 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 SUMO3P55854 103 aaPredicted RBP12.99□□□□□ -0.33
SKA1-202ENST00000398452 FOXD4Q12950 439 aaPredicted RBP12.99□□□□□ -0.33
SKA1-202ENST00000398452 MFAP5Q13361 173 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 CD226Q15762 336 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 FGD3Q5JSP0 725 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 COLEC12Q5KU26 742 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 ENTPD8Q5MY95 495 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 PRAMEF20Q5VT98 475 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 DESI1Q6ICB0 168 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 TMEM81Q6P7N7 255 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 HIPK1Q86Z02 1210 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 RBM45Q8IUH3 476 aaKnown RBP12.99□□□□□ -0.33
SKA1-202ENST00000398452 LACC1Q8IV20 430 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 APLFQ8IW19 511 aaPredicted RBP12.99□□□□□ -0.33
SKA1-202ENST00000398452 SVOPLQ8N434 492 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 PAQR8Q8TEZ7 354 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 TMEM234Q8WY98 164 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 C8orf4Q9NR00 106 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 CTPS2Q9NRF8 586 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 PRDM4Q9UKN5 801 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 WIF1Q9Y5W5 379 aa12.99□□□□□ -0.33
SKA1-202ENST00000398452 TRAPPC13A5PLN9 417 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 G3V2T6 193 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 J3KTA2 159 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 GMFGO60234 142 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 DPM1O60762 260 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 WDPCPO95876 746 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 EPPINO95925 133 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 THRBP10828 461 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 GP1BBP13224 206 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 FPR1P21462 350 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 IFNGR2P38484 337 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 ZNF41P51814 821 aaPredicted RBP12.98□□□□□ -0.33
SKA1-202ENST00000398452 ZNF117Q03924 483 aa12.98□□□□□ -0.33
SKA1-202ENST00000398452 EPS8Q12929 822 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms