RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FAAH2Q6GMR7 532 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 CD300LDQ6UXZ3 194 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 HSDL2Q6YN16 418 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 LANCL3Q6ZV70 420 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 CPEB2Q7Z5Q1 589 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 ZNF614Q8N883 585 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 OR9Q2Q8NGE9 314 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 OR5L2Q8NGL0 311 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 TP53INP1Q96A56 240 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 WWTR1Q9GZV5 400 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 RACGAP1Q9H0H5 632 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 FBXO34Q9NWN3 711 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 CLDN25C9JDP6 229 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 CYP7B1O75881 506 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 IL12BP29460 328 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 IDH2P48735 452 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 TCF15Q12870 199 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 FGFBP1Q14512 234 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 NCF4Q15080 339 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 PTGES3Q15185 160 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 MAPK14Q16539 360 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 ENTPD8Q5MY95 495 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 PDZK1Q5T2W1 519 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 C16orf87Q6PH81 154 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 PAPD4Q6PIY7 484 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 KLHL17Q6TDP4 642 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 TMEM205Q6UW68 189 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 GLRX5Q86SX6 157 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 COMTD1Q86VU5 262 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 STX19Q8N4C7 294 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 OR4N2Q8NGD1 307 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 OR8K3Q8NH51 312 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 UBE2FQ969M7 185 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 ADIPOR1Q96A54 375 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 CDCA4Q9BXL8 241 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 RSPO3Q9BXY4 272 aaPredicted RBP16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 SEMA4CQ9C0C4 833 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 NXF5Q9H1B4 397 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 TMEM27Q9HBJ8 222 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 A3GALT2U3KPV4 340 aa16.78■□□□□ 0.28
CCDC88C-203ENST00000389856 COL27A1Q8IZC6 1860 aaPredicted RBP16.77■□□□□ 0.28
CCDC88C-203ENST00000389856 NPIPB9F8W1W9 429 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 SCDO00767 359 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 GASTP01350 101 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 CD36P16671 472 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 GSTM3P21266 225 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 TGFBR2P37173 567 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 IRF3Q14653 427 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 TRIP6Q15654 476 aaKnown RBP16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 NNATQ16517 81 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 TMEM201Q5SNT2 666 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 ZNF367Q7RTV3 350 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 SLCO6A1Q86UG4 719 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 CCDC103Q8IW40 242 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC34A3Q8N130 599 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 PRSS33Q8NF86 280 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 NUBPLQ8TB37 319 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 DYNC2LI1Q8TCX1 351 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 DIO2Q92813 273 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 FUZQ9BT04 418 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 TRIM2Q9C040 744 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 AASSQ9UDR5 926 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 CHST2Q9Y4C5 530 aa16.77■□□□□ 0.27
CCDC88C-203ENST00000389856 NPIPA5A0A0B4J1W7 369 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 TRBV4-1A0A0J9YWV2 114 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 TRAPPC13A5PLN9 417 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 CPSF4LA6NMK7 179 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 NPIPA7E9PJI5 369 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 CNOT3O75175 753 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 IGKV1D-16P01601 117 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 NPIPA8P0DM63 369 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 ZNF28P17035 718 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 CHMP24386 653 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 NBL1P41271 181 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 EFNA3P52797 238 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 PLCXD2Q0VAA5 305 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 MEDAGQ5VYS4 303 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 SLX4IPQ5VYV7 408 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 ZNF613Q6PF04 617 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 C6orf15Q6UXA7 325 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 PIP4P1Q86T03 277 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 C9orf40Q8IXQ3 194 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 ZNF321PQ8N8H1 164 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 GTPBP3Q969Y2 492 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 LGALS12Q96DT0 336 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 SLC41A3Q96GZ6 507 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 SH3YL1Q96HL8 342 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 SELENONQ9NZV5 590 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 PISDQ9UG56 409 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 KCNE5Q9UJ90 142 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 PADI1Q9ULC6 663 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 PCDHGA3Q9Y5H0 932 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 GPR179Q6PRD1 2367 aa16.76■□□□□ 0.27
CCDC88C-203ENST00000389856 CACNA1HO95180 2353 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 SERINC4A6NH21 518 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 PLD2O14939 933 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 FRS3O43559 492 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 PFDN1O60925 122 aa16.75■□□□□ 0.27
CCDC88C-203ENST00000389856 SEMA7AO75326 666 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms