RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 VANGL1Q8TAA9 524 aaPredicted RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 POC1BQ8TC44 478 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SLC22A8Q8TCC7 542 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SNRNP40Q96DI7 357 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 SGCZQ96LD1 299 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SH3GL1Q99961 368 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 TTTY12Q9BZ98 90 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 METTL7AQ9H8H3 244 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 GORASP2Q9H8Y8 452 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 VNN3Q9NY84 501 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 KLRF1Q9NZS2 232 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 MRTO4Q9UKD2 239 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 ABCG2Q9UNQ0 655 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 B3GNT3Q9Y2A9 372 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 PCDHGA10Q9Y5H3 936 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 MAGED1Q9Y5V3 778 aaPredicted RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 WIF1Q9Y5W5 379 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 DOCK7Q96N67 2140 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 USP9YO00507 2555 aaPredicted RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 ZC3H12DA2A288 527 aaKnown RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 SYNDIG1LA6NDD5 238 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 PYCARD-AS1I3L0S3 204 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 hCG_2039718K7EN88 272 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 GLSO94925 669 aaPredicted RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 PRSS23O95084 383 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 LYPD3O95274 346 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 ZNF682O95780 498 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 CSTAP01040 98 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 SEMG1P04279 462 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 NGFRP08138 427 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 CNR1P21554 472 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 PPIBP23284 216 aaKnown RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 CLK3P49761 638 aaKnown RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 MEOX1P50221 254 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 RASSF2P50749 326 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 CCR4P51679 360 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 FOXK2Q01167 660 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 RBBP4Q09028 425 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 CMPK2Q5EBM0 449 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 TIGD3Q6B0B8 471 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 RTL4Q6ZR62 310 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 ARMC8Q8IUR7 673 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 TEX19Q8NA77 164 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 ZFP62Q8NB50 900 aaPredicted RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 OR2M3Q8NG83 312 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 PHF10Q8WUB8 498 aaKnown RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 TM9SF4Q92544 642 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 ASB9Q96DX5 294 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 HSH2DQ96JZ2 352 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 FAM210AQ96ND0 272 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 G6PC3Q9BUM1 346 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 SLC25A18Q9H1K4 315 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 DEFB127Q9H1M4 99 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 NDUFAF4Q9P032 175 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 ACTR3BQ9P1U1 418 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 SEC14L3Q9UDX4 400 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 PCDHGB3Q9Y5G1 929 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 DIDO1Q9BTC0 2240 aaKnown RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 ANKRD33BA6NCL7 494 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 LRRN3E7EW58 273 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 C1QL1O75973 258 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 LINGO3P0C6S8 592 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 ETS2P15036 469 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 NQO1P15559 274 aaKnown RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 PSMA4P25789 261 aaKnown RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 B3GALT5-AS1P59052 145 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 C3AR1Q16581 482 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 SOWAHCQ53LP3 525 aaPredicted RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 WIPI1Q5MNZ9 446 aaPredicted RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 TBPL2Q6SJ96 375 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 TMEM179BQ7Z7N9 219 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 ADGRG5Q8IZF4 528 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 HS3ST5Q8IZT8 346 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 LILRA2Q8N149 483 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 TMCO5AQ8N6Q1 288 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 FADS6Q8N9I5 356 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 GOLM1Q8NBJ4 401 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 GPR119Q8TDV5 335 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 PYDC1Q8WXC3 89 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 ITFG2Q969R8 447 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 TBL1XR1Q9BZK7 514 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 RNF32Q9H0A6 362 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 TMEM185BQ9H7F4 350 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 MAN2C1Q9NTJ4 1040 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 ASF1BQ9NVP2 202 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 PRPF19Q9UMS4 504 aaKnown RBP3.65□□□□□ -1.82
LIG4-201ENST00000356922 SLC6A5Q9Y345 797 aa3.65□□□□□ -1.82
LIG4-201ENST00000356922 PRR14LQ5THK1 2151 aa3.65□□□□□ -1.83
LIG4-201ENST00000356922 MYO7BQ6PIF6 2116 aa3.65□□□□□ -1.83
LIG4-201ENST00000356922 C15orf38-AP3S2A0A0A6YYH1 394 aa3.65□□□□□ -1.83
LIG4-201ENST00000356922 H3BNX3 289 aa3.65□□□□□ -1.83
LIG4-201ENST00000356922 GTPBP1O00178 669 aaKnown RBP3.65□□□□□ -1.83
LIG4-201ENST00000356922 SCDO00767 359 aa3.65□□□□□ -1.83
LIG4-201ENST00000356922 ZNF264O43296 627 aa3.65□□□□□ -1.83
LIG4-201ENST00000356922 FUT1P19526 365 aa3.65□□□□□ -1.83
LIG4-201ENST00000356922 CCNA2P20248 432 aa3.65□□□□□ -1.83
LIG4-201ENST00000356922 ADH7P40394 386 aa3.65□□□□□ -1.83
LIG4-201ENST00000356922 IDH2P48735 452 aaKnown RBP3.65□□□□□ -1.83
LIG4-201ENST00000356922 PSMD4P55036 377 aaKnown RBP3.65□□□□□ -1.83
LIG4-201ENST00000356922 PLGLB1Q02325 96 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms